* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/pkgnet.Rcheck’ * using R Under development (unstable) (2024-04-10 r86393) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘pkgnet/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘pkgnet’ version ‘0.4.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘pkgnet’ can be installed ... [18s/65s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/pkgnet-00install.html' for details. * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s/20s] OK * checking Rd files ... NOTE checkRd: (-1) DependencyReporter.Rd:21-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) DependencyReporter.Rd:44-55: Lost braces in \itemize; meant \describe ? checkRd: (-1) DependencyReporter.Rd:56-60: Lost braces in \itemize; meant \describe ? checkRd: (-1) DependencyReporter.Rd:69-75: Lost braces in \itemize; meant \describe ? checkRd: (-1) DependencyReporter.Rd:87-91: Lost braces in \itemize; meant \describe ? checkRd: (-1) DependencyReporter.Rd:147-153: Lost braces in \itemize; meant \describe ? checkRd: (-1) DependencyReporter.Rd:154-158: Lost braces in \itemize; meant \describe ? checkRd: (-1) DirectedGraph.Rd:27-33: Lost braces in \itemize; meant \describe ? checkRd: (-1) DirectedGraph.Rd:34-38: Lost braces in \itemize; meant \describe ? checkRd: (-1) DirectedGraph.Rd:45-51: Lost braces in \itemize; meant \describe ? checkRd: (-1) DirectedGraph.Rd:52-56: Lost braces in \itemize; meant \describe ? checkRd: (-1) FunctionReporter.Rd:63-70: Lost braces in \itemize; meant \describe ? checkRd: (-1) FunctionReporter.Rd:86-97: Lost braces in \itemize; meant \describe ? checkRd: (-1) FunctionReporter.Rd:98-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) FunctionReporter.Rd:111-117: Lost braces in \itemize; meant \describe ? checkRd: (-1) FunctionReporter.Rd:129-133: Lost braces in \itemize; meant \describe ? checkRd: (-1) FunctionReporter.Rd:189-195: Lost braces in \itemize; meant \describe ? checkRd: (-1) FunctionReporter.Rd:196-200: Lost braces in \itemize; meant \describe ? checkRd: (-1) GraphClasses.Rd:21-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) GraphClasses.Rd:27-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) GraphClasses.Rd:44-50: Lost braces in \itemize; meant \describe ? checkRd: (-1) GraphClasses.Rd:51-55: Lost braces in \itemize; meant \describe ? checkRd: (-1) GraphClasses.Rd:62-68: Lost braces in \itemize; meant \describe ? checkRd: (-1) GraphClasses.Rd:69-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) GraphClasses.Rd:106-110: Lost braces in \itemize; meant \describe ? checkRd: (-1) GraphClasses.Rd:111-115: Lost braces in \itemize; meant \describe ? checkRd: (-1) GraphClasses.Rd:121-125: Lost braces in \itemize; meant \describe ? checkRd: (-1) InheritanceReporter.Rd:49-56: Lost braces in \itemize; meant \describe ? checkRd: (-1) InheritanceReporter.Rd:72-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) InheritanceReporter.Rd:84-88: Lost braces in \itemize; meant \describe ? checkRd: (-1) InheritanceReporter.Rd:97-103: Lost braces in \itemize; meant \describe ? checkRd: (-1) InheritanceReporter.Rd:115-119: Lost braces in \itemize; meant \describe ? checkRd: (-1) InheritanceReporter.Rd:175-181: Lost braces in \itemize; meant \describe ? checkRd: (-1) InheritanceReporter.Rd:182-186: Lost braces in \itemize; meant \describe ? checkRd: (-1) NetworkReporters.Rd:24-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReport.Rd:23-36: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReport.Rd:37-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReport.Rd:49-53: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReport.Rd:50-52: Lost braces 50 | \item{\bold{\code{reporter}}: Instantiated package reporter | ^ checkRd: (-1) PackageReport.Rd:54-58: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReport.Rd:65-69: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReport.Rd:107-113: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReport.Rd:114-118: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReporters.Rd:18-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReporters.Rd:41-52: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReporters.Rd:53-57: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReporters.Rd:66-72: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReporters.Rd:99-105: Lost braces in \itemize; meant \describe ? checkRd: (-1) PackageReporters.Rd:106-110: Lost braces in \itemize; meant \describe ? checkRd: (-1) SummaryReporter.Rd:19-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) SummaryReporter.Rd:42-53: Lost braces in \itemize; meant \describe ? checkRd: (-1) SummaryReporter.Rd:54-58: Lost braces in \itemize; meant \describe ? checkRd: (-1) SummaryReporter.Rd:67-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) SummaryReporter.Rd:100-106: Lost braces in \itemize; meant \describe ? checkRd: (-1) SummaryReporter.Rd:107-111: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... OK Running ‘testthat.R’ * checking PDF version of manual ... [8s/18s] OK * checking HTML version of manual ... NOTE Found the following HTML validation problems: DependencyReporter.html:35:1 (DependencyReporter.Rd:18): Warning: trimming empty
FunctionReporter.html:101:1 (FunctionReporter.Rd:60): Warning: trimming empty
InheritanceReporter.html:79:1 (InheritanceReporter.Rd:46): Warning: trimming empty
PackageReporters.html:34:1 (PackageReporters.Rd:15): Warning: trimming empty
SummaryReporter.html:33:1 (SummaryReporter.Rd:16): Warning: trimming empty
* checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs