* installing *source* package ‘phylosem’ ...
** package ‘phylosem’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/phylosem/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c phylosem.cpp -o phylosem.o
"/data/gannet/ripley/R/R-devel/bin/Rscript" -e "cat(as.character(packageVersion('TMB')), '\n', sep="", file='../inst/TMB-version')"
"/data/gannet/ripley/R/R-devel/bin/Rscript" -e "cat(as.character(packageVersion('Matrix')), '\n', sep="", file='../inst/Matrix-version')"
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o phylosem.so phylosem.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/phylosem/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/phylosem/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/phylosem/src'
installing to /data/gannet/ripley/R/packages/tests-devel/phylosem.Rcheck/00LOCK-phylosem/00new/phylosem/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (phylosem)