* installing *source* package ‘pense’ ... ** package ‘pense’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-13 -std=gnu++17 accepts -g... yes checking whether C++ compiler accepts -fstrict-aliasing... yes checking for g++-13 -std=gnu++17 option to support OpenMP... -fopenmp checking C++ support for OpenMP... yes checking OpenMP support for tasks... yes, with shared constant local variables checking OpenMP support for custom reductions... yes configure: Metrics disabled configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/autoconfig.R config.status: creating src/autoconfig.hpp ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ using C++17 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/pense/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c enpy_initest.cc -o enpy_initest.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c enpy_psc.cc -o enpy_psc.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c r_en_regression.cc -o r_en_regression.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c r_enpy.cc -o r_enpy.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c r_interface.cc -o r_interface.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c r_interface_utils.cc -o r_interface_utils.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c r_mesten_regression.cc -o r_mesten_regression.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c r_pense_regression.cc -o r_pense_regression.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c r_robust_utils.cc -o r_robust_utils.o In file included from s_loss.hpp:17, from cd_pense.hpp:20, from rcpp_parse_config.hpp:13, from rcpp_integration.hpp:17, from r_robust_utils.cc:12: robust_scale_location.hpp: In instantiation of 'arma::mat pense::Mscale::GradientHessian(const arma::vec&) [with RhoFunction = pense::RhoBisquare; arma::mat = arma::Mat; arma::vec = arma::Col]': r_robust_utils.cc:93:75: required from here robust_scale_location.hpp:198:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 198 | for (int i = 0; i < values.n_elem; ++i) { | ~~^~~~~~~~~~~~~~~ robust_scale_location.hpp:200:25: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 200 | for (int k = i; k < values.n_elem; ++k) { | ~~^~~~~~~~~~~~~~~ robust_scale_location.hpp: In instantiation of 'arma::Col::fixed<3> pense::Mscale::MaxGradientHessian(const arma::vec&) [with RhoFunction = pense::RhoBisquare; arma::vec = arma::Col]': r_robust_utils.cc:184:54: required from here robust_scale_location.hpp:248:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 248 | for (int i = 0; i < values.n_elem; ++i) { | ~~^~~~~~~~~~~~~~~ robust_scale_location.hpp:250:25: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 250 | for (int k = i; k < values.n_elem; ++k) { | ~~^~~~~~~~~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c r_utilities.cc -o r_utilities.o In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:129, from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from nsoptim/armadillo_forward.hpp:22, from nsoptim_forward.hpp:14, from r_utilities.hpp:12, from r_utilities.cc:9: /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/exceptions.h:60:21: warning: inline function 'void Rcpp::exception::record_stack_trace()' used but never defined 60 | inline void record_stack_trace(); | ^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/exceptions.h:55:21: warning: inline function 'void Rcpp::exception::copy_stack_trace_to_r() const' used but never defined 55 | inline void copy_stack_trace_to_r() const; | ^~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/protection/protection.h:23, from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:127: /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/protection/Armor.h:38:23: warning: inline function 'Rcpp::Armor& Rcpp::Armor::operator=(const U&) [with U = SEXPREC*; T = SEXPREC*]' used but never defined 38 | inline Armor& operator=( const U& x ) ; | ^~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_parse_config.cc -o rcpp_parse_config.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rho.cc -o rho.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D__STDC_LIMIT_MACROS -DHAVE_RCPP -DTESTTHAT_DISABLED -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fstrict-aliasing -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c robust_scale_location.cc -o robust_scale_location.o g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o pense.so enpy_initest.o enpy_psc.o r_en_regression.o r_enpy.o r_interface.o r_interface_utils.o r_mesten_regression.o r_pense_regression.o r_robust_utils.o r_utilities.o rcpp_parse_config.o rho.o robust_scale_location.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/pense/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/pense/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/pense/src' installing to /data/gannet/ripley/R/packages/tests-devel/pense.Rcheck/00LOCK-pense/00new/pense/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pense)