* installing *source* package ‘pcalg’ ... ** package ‘pcalg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/pcalg/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c constraint.cpp -o constraint.o In file included from ../inst/include/pcalg/constraint.hpp:8, from constraint.cpp:8: ../inst/include/pcalg/armaLapack.hpp:17: warning: "NDEBUG" redefined 17 | #define NDEBUG | : note: this is the location of the previous definition constraint.cpp:173: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 173 | #pragma omp parallel for | In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/scoped_ptr.hpp:13, from /data/gannet/ripley/R/test-dev/BH/include/boost/graph/adjacency_list.hpp:22, from ../inst/include/pcalg/constraint.hpp:10: /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) | ^~~~~~~~ In file included from /usr/local/gcc13/include/c++/13.2.0/memory:78, from /data/gannet/ripley/R/test-dev/BH/include/boost/unordered/detail/opt_storage.hpp:11, from /data/gannet/ripley/R/test-dev/BH/include/boost/unordered/detail/archive_constructed.hpp:12, from /data/gannet/ripley/R/test-dev/BH/include/boost/unordered/detail/serialize_container.hpp:14, from /data/gannet/ripley/R/test-dev/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12, from /data/gannet/ripley/R/test-dev/BH/include/boost/unordered/unordered_set.hpp:17, from /data/gannet/ripley/R/test-dev/BH/include/boost/unordered_set.hpp:17, from /data/gannet/ripley/R/test-dev/BH/include/boost/graph/adjacency_list.hpp:20: /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/vector_property_map.hpp:14, from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/property_map.hpp:598, from /data/gannet/ripley/R/test-dev/BH/include/boost/graph/adjacency_list.hpp:27: /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gies.cpp -o gies.o In file included from ../inst/include/pcalg/constraint.hpp:8, from gies.cpp:21: ../inst/include/pcalg/armaLapack.hpp:17: warning: "NDEBUG" redefined 17 | #define NDEBUG | : note: this is the location of the previous definition gies.cpp:607: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 607 | #pragma omp parallel for | In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/scoped_ptr.hpp:13, from /data/gannet/ripley/R/test-dev/BH/include/boost/graph/adjacency_list.hpp:22, from gies.cpp:12: /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) | ^~~~~~~~ In file included from /usr/local/gcc13/include/c++/13.2.0/memory:78, from /data/gannet/ripley/R/test-dev/BH/include/boost/unordered/detail/opt_storage.hpp:11, from /data/gannet/ripley/R/test-dev/BH/include/boost/unordered/detail/archive_constructed.hpp:12, from /data/gannet/ripley/R/test-dev/BH/include/boost/unordered/detail/serialize_container.hpp:14, from /data/gannet/ripley/R/test-dev/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12, from /data/gannet/ripley/R/test-dev/BH/include/boost/unordered/unordered_set.hpp:17, from /data/gannet/ripley/R/test-dev/BH/include/boost/unordered_set.hpp:17, from /data/gannet/ripley/R/test-dev/BH/include/boost/graph/adjacency_list.hpp:20: /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/vector_property_map.hpp:14, from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/property_map.hpp:598, from /data/gannet/ripley/R/test-dev/BH/include/boost/graph/adjacency_list.hpp:27: /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c greedy.cpp -o greedy.o In file included from ../inst/include/pcalg/score.hpp:12, from ../inst/include/pcalg/greedy.hpp:11, from greedy.cpp:8: ../inst/include/pcalg/armaLapack.hpp:17: warning: "NDEBUG" redefined 17 | #define NDEBUG | : note: this is the location of the previous definition In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/scoped_ptr.hpp:13, from /data/gannet/ripley/R/test-dev/BH/include/boost/graph/adjacency_list.hpp:22, from ../inst/include/pcalg/greedy.hpp:18: /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) | ^~~~~~~~ In file included from /usr/local/gcc13/include/c++/13.2.0/memory:78, from /data/gannet/ripley/R/test-dev/BH/include/boost/dynamic_bitset_fwd.hpp:15, from /data/gannet/ripley/R/test-dev/BH/include/boost/dynamic_bitset/dynamic_bitset.hpp:44, from /data/gannet/ripley/R/test-dev/BH/include/boost/dynamic_bitset.hpp:15, from ../inst/include/pcalg/score.hpp:17: /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/vector_property_map.hpp:14, from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/property_map.hpp:598, from /data/gannet/ripley/R/test-dev/BH/include/boost/graph/adjacency_list.hpp:27: /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c score.cpp -o score.o In file included from ../inst/include/pcalg/score.hpp:12, from score.cpp:6: ../inst/include/pcalg/armaLapack.hpp:17: warning: "NDEBUG" redefined 17 | #define NDEBUG | : note: this is the location of the previous definition In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/scoped_ptr.hpp:13, from /data/gannet/ripley/R/test-dev/BH/include/boost/graph/adjacency_list.hpp:22, from ../inst/include/pcalg/greedy.hpp:18, from score.cpp:7: /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) | ^~~~~~~~ In file included from /usr/local/gcc13/include/c++/13.2.0/memory:78, from /data/gannet/ripley/R/test-dev/BH/include/boost/dynamic_bitset_fwd.hpp:15, from /data/gannet/ripley/R/test-dev/BH/include/boost/dynamic_bitset/dynamic_bitset.hpp:44, from /data/gannet/ripley/R/test-dev/BH/include/boost/dynamic_bitset.hpp:15, from ../inst/include/pcalg/score.hpp:17: /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/vector_property_map.hpp:14, from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/property_map.hpp:598, from /data/gannet/ripley/R/test-dev/BH/include/boost/graph/adjacency_list.hpp:27: /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o pcalg.so constraint.o gies.o greedy.o init.o score.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/pcalg/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/pcalg/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/pcalg/src' installing to /data/gannet/ripley/R/packages/tests-devel/pcalg.Rcheck/00LOCK-pcalg/00new/pcalg/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcalg)