* installing *source* package ‘opusminer’ ... ** package ‘opusminer’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/opusminer/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c filter_itemsets.cpp -o filter_itemsets.o In file included from globals.h:28, from filter_itemsets.cpp:21: tidset.h: In function 'void dintersection(tidset&, tidset&)': tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable] 124 | const tidset::const_iterator end1 = s1.end(); | ^~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c find_closure.cpp -o find_closure.o In file included from globals.h:28, from utils.h:19, from find_closure.cpp:19: tidset.h: In function 'void dintersection(tidset&, tidset&)': tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable] 124 | const tidset::const_iterator end1 = s1.end(); | ^~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c find_itemsets.cpp -o find_itemsets.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fisher.cpp -o fisher.o In file included from globals.h:28, from find_itemsets.cpp:25: tidset.h: In function 'void dintersection(tidset&, tidset&)': tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable] 124 | const tidset::const_iterator end1 = s1.end(); | ^~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c globals.cpp -o globals.o In file included from globals.h:28, from globals.cpp:19: tidset.h: In function 'void dintersection(tidset&, tidset&)': tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable] 124 | const tidset::const_iterator end1 = s1.end(); | ^~~~ gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c itemQClass.cpp -o itemQClass.o In file included from globals.h:28, from itemQClass.cpp:19: tidset.h: In function 'void dintersection(tidset&, tidset&)': tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable] 124 | const tidset::const_iterator end1 = s1.end(); | ^~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c itemset.cpp -o itemset.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c opus_miner.cpp -o opus_miner.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c print_itemsets.cpp -o print_itemsets.o In file included from globals.h:28, from opus_miner.cpp:26: tidset.h: In function 'void dintersection(tidset&, tidset&)': tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable] 124 | const tidset::const_iterator end1 = s1.end(); | ^~~~ In file included from globals.h:28, from print_itemsets.cpp:22: tidset.h: In function 'void dintersection(tidset&, tidset&)': tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable] 124 | const tidset::const_iterator end1 = s1.end(); | ^~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utils.cpp -o utils.o In file included from globals.h:28, from utils.h:19, from utils.cpp:18: tidset.h: In function 'void dintersection(tidset&, tidset&)': tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable] 124 | const tidset::const_iterator end1 = s1.end(); | ^~~~ g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o opusminer.so RcppExports.o filter_itemsets.o find_closure.o find_itemsets.o fisher.o globals.o init.o itemQClass.o itemset.o opus_miner.o print_itemsets.o utils.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/opusminer/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/opusminer/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/opusminer/src' installing to /data/gannet/ripley/R/packages/tests-devel/opusminer.Rcheck/00LOCK-opusminer/00new/opusminer/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (opusminer)