* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/openEBGM.Rcheck’
* using R Under development (unstable) (2024-04-05 r86344)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘openEBGM/DESCRIPTION’ ... OK
* this is package ‘openEBGM’ version ‘0.9.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘openEBGM’ can be installed ... [11s/14s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/openEBGM-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s/21s] OK
* checking Rd files ... NOTE
checkRd: (-1) Qn.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Qn.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Qn.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) autoHyper.Rd:64-67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) autoHyper.Rd:68-69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) autoHyper.Rd:70-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) autoHyper.Rd:72-74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) autoHyper.Rd:75-77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ebScores.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ebScores.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ebScores.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ebgm.Rd:40-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ebgm.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ebgm.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) exploreHypers.Rd:54-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreHypers.Rd:57-58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreHypers.Rd:59-62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreHypers.Rd:63-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperEM.Rd:89-90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperEM.Rd:91-93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperEM.Rd:94-95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperEM.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperEM.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperEM.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperEM.Rd:99-100: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperEM.Rd:101-102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperEM.Rd:103-105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) negLL.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) negLL.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) negLL.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) negLLsquash.Rd:45-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) negLLsquash.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) negLLsquash.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) negLLzero.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) negLLzero.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) negLLzero.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) negLLzeroSquash.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) negLLzeroSquash.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) negLLzeroSquash.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quantBisect.Rd:55-56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quantBisect.Rd:57-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quantBisect.Rd:59: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [18s/19s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [48s/59s] OK
  Running ‘testthat.R’ [48s/58s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [149s/192s] OK
* checking PDF version of manual ... [9s/14s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE