Install log for 'ocf'

* installing *source* package ‘ocf’ ...
** package ‘ocf’ successfully unpacked and MD5 sums checked
** using staged installation
** preparing to configure package 'ocf' ...
Checking if R knows a CXX17 compiler... g++-13
** finished configure for package 'ocf'
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ocf/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c AAA_check_cpp11.cpp -o AAA_check_cpp11.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Data.cpp -o Data.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c DataSparse.cpp -o DataSparse.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Forest.cpp -o Forest.o
In file included from Forest.cpp:14:
DataChar.h: In member function 'virtual double ocf::DataChar::get_x(size_t, size_t) const':
DataChar.h:26:12: warning: unused variable 'col_permuted' [-Wunused-variable]
   26 |     size_t col_permuted = col;
      |            ^~~~~~~~~~~~
In file included from Forest.cpp:15:
DataDouble.h: In member function 'virtual double ocf::DataDouble::get_x(size_t, size_t) const':
DataDouble.h:26:12: warning: unused variable 'col_permuted' [-Wunused-variable]
   26 |     size_t col_permuted = col;
      |            ^~~~~~~~~~~~
In file included from Forest.cpp:16:
DataFloat.h: In member function 'virtual double ocf::DataFloat::get_x(size_t, size_t) const':
DataFloat.h:26:12: warning: unused variable 'col_permuted' [-Wunused-variable]
   26 |     size_t col_permuted = col;
      |            ^~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c OrderedCorrelationForest.cpp -o OrderedCorrelationForest.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c OrderedCorrelationTree.cpp -o OrderedCorrelationTree.o
OrderedCorrelationTree.cpp: In member function 'void ocf::TreeOrdered::addImpurityImportance(size_t, size_t, double)':
OrderedCorrelationTree.cpp:508:10: warning: unused variable 'num_samples_node' [-Wunused-variable]
  508 |   size_t num_samples_node = end_pos[nodeID] - start_pos[nodeID];
      |          ^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Tree.cpp -o Tree.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c forest_weights_fitted_cpp.cpp -o forest_weights_fitted_cpp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c forest_weights_predicted_cpp.cpp -o forest_weights_predicted_cpp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c honest_fitted_cpp.cpp -o honest_fitted_cpp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c honest_predictions_cpp.cpp -o honest_predictions_cpp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ocfCpp.cpp -o ocfCpp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utility.cpp -o utility.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utilityRcpp.cpp -o utilityRcpp.o
utilityRcpp.cpp: In function 'Rcpp::NumericMatrix randomObsNode(Rcpp::IntegerMatrix, Rcpp::NumericVector, Rcpp::IntegerMatrix)':
utilityRcpp.cpp:19:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
   19 |   for (size_t i = 0; i < groups.ncol(); ++i) {
      |                      ~~^~~~~~~~~~~~~~~
utilityRcpp.cpp:21:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
   21 |     for (size_t j = 0; j < groups.nrow(); ++j) {
      |                        ~~^~~~~~~~~~~~~~~
In file included from ocfCpp.cpp:11:
DataChar.h: In member function 'virtual double ocf::DataChar::get_x(size_t, size_t) const':
DataChar.h:26:12: warning: unused variable 'col_permuted' [-Wunused-variable]
   26 |     size_t col_permuted = col;
      |            ^~~~~~~~~~~~
In file included from ocfCpp.cpp:12:
DataRcpp.h: In member function 'virtual double ocf::DataRcpp::get_x(size_t, size_t) const':
DataRcpp.h:31:12: warning: unused variable 'col_permuted' [-Wunused-variable]
   31 |     size_t col_permuted = col;
      |            ^~~~~~~~~~~~
In file included from ocfCpp.cpp:13:
DataFloat.h: In member function 'virtual double ocf::DataFloat::get_x(size_t, size_t) const':
DataFloat.h:26:12: warning: unused variable 'col_permuted' [-Wunused-variable]
   26 |     size_t col_permuted = col;
      |            ^~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o ocf.so AAA_check_cpp11.o Data.o DataSparse.o Forest.o OrderedCorrelationForest.o OrderedCorrelationTree.o RcppExports.o Tree.o forest_weights_fitted_cpp.o forest_weights_predicted_cpp.o honest_fitted_cpp.o honest_predictions_cpp.o ocfCpp.o utility.o utilityRcpp.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ocf/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ocf/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ocf/src'
installing to /data/gannet/ripley/R/packages/tests-devel/ocf.Rcheck/00LOCK-ocf/00new/ocf/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ocf)