* installing *source* package ‘nlmixr2extra’ ...
** package ‘nlmixr2extra’ successfully unpacked and MD5 sums checked
** using staged installation
R Under development (unstable) (2024-04-05 r86344) -- "Unsuffered Consequences"
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> if (!dir.exists("data")) {
+ dir.create("data")
+ }
>
> .in <- suppressWarnings(readLines("src/Makevars.in"))
> if (.Platform$OS.type == "windows" && !file.exists("src/Makevars.win")) {
+ file.out <- file("src/Makevars.win", "wb")
+ writeLines(.in, file.out)
+ close(file.out)
+ } else {
+ file.out <- file("src/Makevars", "wb")
+ writeLines(.in, file.out)
+ close(file.out)
+ }
>
> proc.time()
user system elapsed
0.300 0.105 0.530
--------[begin src/Makevars]--------
## -*- mode: makefile; -*-
PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -DARMA_USE_CXX11
PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
--------[end src/Makevars]--------
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/nlmixr2extra/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CXX11 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CXX11 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c preCondInv.cpp -o preCondInv.o
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o nlmixr2extra.so RcppExports.o init.o preCondInv.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/nlmixr2extra/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/nlmixr2extra/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/nlmixr2extra/src'
installing to /data/gannet/ripley/R/packages/tests-devel/nlmixr2extra.Rcheck/00LOCK-nlmixr2extra/00new/nlmixr2extra/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nlmixr2extra)