* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/neojags.Rcheck’
* using R Under development (unstable) (2024-04-05 r86344)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘neojags/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘neojags’ version ‘0.1.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘neojags’ can be installed ... [25s/35s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/neojags-00install.html' for details.
* used C compiler: ‘gcc-13 (GCC) 13.2.0’
* used C++ compiler: ‘g++-13 (GCC) 13.2.0’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [15s/20s] OK
  Running ‘checkmodule.R’
  Running ‘spelling.R’
  Comparing ‘spelling.Rout’ to ‘spelling.Rout.save’ ...3,27d2
< > # This file is copied and modified from runjags package
< > # Copyright (C) 2013 Matthew Denwood <matthewdenwood@mac.com> and Achmad Syahrul Choir <madsyair@gmail.com>
< > # 
< > # This code allows the distributions provided by the neojags module
< > # to be tested from within R.  
< > # 
< > # This version of the module is compatible with JAGS version 3 and 4.
< > # Some necessary modifications are controlled using the INCLUDERSCALARDIST
< > # macro which is defined by makevars if JAGS version 3 is detected.
< > # Once JAGS version 3 becomes obsolete the redundant code will be
< > # removed from neojags.
< > # 
< > # neojags is free software: you can redistribute it and/or modify
< > # it under the terms of the GNU General Public License as published by
< > # the Free Software Foundation, either version 3 of the License, or
< > # (at your option) any later version.
< > # 
< > # neojags is distributed in the hope that it will be useful,
< > # but WITHOUT ANY WARRANTY; without even the implied warranty of
< > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
< > # GNU General Public License for more details.
< > # 
< > # You should have received a copy of the GNU General Public License
< > # along with runjags  If not, see <http://www.gnu.org/licenses/>.
< > 
31c6
< NULL
---
> All Done!
  Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [25s/32s] OK
* checking PDF version of manual ... [7s/12s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: OK