* installing *source* package ‘mixR’ ...
** package ‘mixR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mixR/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c mixCpp.cpp -o mixCpp.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/sugar/functions/functions.h:54,
                 from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/sugar/sugar.h:31,
                 from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:78,
                 from mixCpp.cpp:1:
In member function 'double Rcpp::sugar::Pow<RTYPE, NA, T, EXPONENT_TYPE>::operator[](R_xlen_t) const [with int RTYPE = 14; bool NA = true; T = Rcpp::Vector<14, Rcpp::PreserveStorage>; EXPONENT_TYPE = double]',
    inlined from 'double Rcpp::sugar::Times_Vector_Vector<14, LHS_NA, LHS_T, RHS_NA, RHS_T>::operator[](R_xlen_t) const [with bool LHS_NA = true; LHS_T = Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >; bool RHS_NA = true; RHS_T = Rcpp::sugar::Pow<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, double>]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/sugar/operators/times.h:71:23,
    inlined from 'double Rcpp::sugar::Sum<14, NA, T>::get() const [with bool NA = true; T = Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >, true, Rcpp::sugar::Pow<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, double> >]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/sugar/functions/sum.h:65:22,
    inlined from 'Rcpp::sugar::Lazy<T, EXPR>::operator T() const [with T = double; EXPR = Rcpp::sugar::Sum<14, true, Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >, true, Rcpp::sugar::Pow<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, double> > >]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/sugar/functions/Lazy.h:31:72,
    inlined from 'Rcpp::NumericVector newton_weib_C(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)' at mixCpp.cpp:867:54:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/sugar/functions/pow.h:36:25: warning: 'r_new' may be used uninitialized [-Wmaybe-uninitialized]
   36 |             return ::pow( object[i], op );
      |                    ~~~~~^~~~~~~~~~~~~~~~~
mixCpp.cpp: In function 'Rcpp::NumericVector newton_weib_C(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)':
mixCpp.cpp:860:30: note: 'r_new' was declared here
  860 |     double theta, lambda, k, r_new;
      |                              ^~~~~
mixCpp.cpp: In function 'Rcpp::NumericVector newton_gamma_C(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)':
mixCpp.cpp:536:12: warning: 'alpha_new' may be used uninitialized [-Wmaybe-uninitialized]
  536 |     lambda = alpha_new / delta;
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~
mixCpp.cpp:528:12: note: 'alpha_new' was declared here
  528 |     double alpha_new, lambda;
      |            ^~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o mixR.so RcppExports.o mixCpp.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mixR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mixR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mixR/src'
installing to /data/gannet/ripley/R/packages/tests-devel/mixR.Rcheck/00LOCK-mixR/00new/mixR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mixR)