* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/metan.Rcheck’ * using R Under development (unstable) (2024-04-05 r86344) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘metan/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘metan’ version ‘1.18.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘metan’ can be installed ... [67s/76s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/metan-00install.html' for details. * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [111s/134s] OK * checking Rd files ... NOTE checkRd: (-1) blup_indexes.Rd:98: Lost braces 98 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) blup_indexes.Rd:98: Lost braces 98 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) cv_ammi.Rd:104: Lost braces 104 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, | ^ checkRd: (-1) cv_ammi.Rd:104: Lost braces 104 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, | ^ checkRd: (-1) cv_blup.Rd:121: Lost braces 121 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, | ^ checkRd: (-1) cv_blup.Rd:121: Lost braces 121 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, | ^ checkRd: (-1) gamem_met.Rd:177: Lost braces 177 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) gamem_met.Rd:177: Lost braces 177 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) ge_stats.Rd:143: Lost braces 143 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) ge_stats.Rd:143: Lost braces 143 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) get_model_data.Rd:378: Lost braces 378 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) get_model_data.Rd:378: Lost braces 378 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) get_model_data.Rd:384: Lost braces 384 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and M.I. Diel. | ^ checkRd: (-1) get_model_data.Rd:384: Lost braces 384 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and M.I. Diel. | ^ checkRd: (-1) mps.Rd:179: Lost braces 179 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) mps.Rd:179: Lost braces 179 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) mtmps.Rd:108: Lost braces 108 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and | ^ checkRd: (-1) mtmps.Rd:108: Lost braces 108 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and | ^ checkRd: (-1) mtsi.Rd:128: Lost braces 128 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and | ^ checkRd: (-1) mtsi.Rd:128: Lost braces 128 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and | ^ checkRd: (-1) plot.mtmps.Rd:112: Lost braces 112 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and M.I. Diel. 2019. Mean performance and stability in multi-environment trials II: Selection based on multiple traits. Agron. J. (in press). | ^ checkRd: (-1) plot.mtmps.Rd:112: Lost braces 112 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and M.I. Diel. 2019. Mean performance and stability in multi-environment trials II: Selection based on multiple traits. Agron. J. (in press). | ^ checkRd: (-1) plot.mtsi.Rd:107: Lost braces 107 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and M.I. Diel. 2019. Mean performance and stability in multi-environment trials II: Selection based on multiple traits. Agron. J. (in press). | ^ checkRd: (-1) plot.mtsi.Rd:107: Lost braces 107 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and M.I. Diel. 2019. Mean performance and stability in multi-environment trials II: Selection based on multiple traits. Agron. J. (in press). | ^ checkRd: (-1) plot_scores.Rd:274: Lost braces 274 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) plot_scores.Rd:274: Lost braces 274 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) waas.Rd:125: Lost braces 125 | override the number of significant axes according to the argument code{prob}. | ^ checkRd: (-1) waas.Rd:191: Lost braces 191 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, | ^ checkRd: (-1) waas.Rd:191: Lost braces 191 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, | ^ checkRd: (-1) waas_means.Rd:116: Lost braces 116 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) waas_means.Rd:116: Lost braces 116 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) waasb.Rd:253: Lost braces 253 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) waasb.Rd:253: Lost braces 253 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) wsmp.Rd:92: Lost braces 92 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ checkRd: (-1) wsmp.Rd:92: Lost braces 92 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [12s/16s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [127s/195s] OK * checking PDF version of manual ... [25s/38s] OK * checking HTML version of manual ... [20s/37s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE