* installing *source* package ‘marked’ ...
** package ‘marked’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using Fortran compiler: ‘GNU Fortran (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/marked/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c bayesCR.cpp -o bayesCR.o
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c cjs.f -o cjs.o
cjs.f:9:25:

    9 |        DOUBLE PRECISION X,Y
      |                         1
Warning: Unused variable 'x' declared at (1) [-Wunused-variable]
cjs.f:9:27:

    9 |        DOUBLE PRECISION X,Y
      |                           1
Warning: Unused variable 'y' declared at (1) [-Wunused-variable]
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c cjs1tldmat.f -o cjs1tldmat.o
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c cjs1tlgam.f -o cjs1tlgam.o
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c cjs2tldmat.f -o cjs2tldmat.o
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c cjs2tlgam.f -o cjs2tlgam.o
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c cjsdmat.f -o cjsdmat.o
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c cjsgamma.f -o cjsgamma.o
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c hmm_like.f -o hmm_like.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c ms2gamma.f -o ms2gamma.o
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c msdmat.f -o msdmat.o
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c msgamma.f -o msgamma.o
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c mvmsdmat.f -o mvmsdmat.o
mvmsdmat.f:1:55:

    1 |        SUBROUTINE MVMSP(P,DELTA,N,M,F,T,NP,NOBS,PCOUNTS,INDICES,
      |                                                       1
Warning: Unused dummy argument 'pcounts' at (1) [-Wunused-dummy-argument]
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c ums2dmat.f -o ums2dmat.o
gfortran-13  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c umsdmat.f -o umsdmat.o
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o marked.so bayesCR.o cjs.o cjs1tldmat.o cjs1tlgam.o cjs2tldmat.o cjs2tlgam.o cjsdmat.o cjsgamma.o hmm_like.o init.o ms2gamma.o msdmat.o msgamma.o mvmsdmat.o ums2dmat.o umsdmat.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/marked/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/marked/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/marked/src'
installing to /data/gannet/ripley/R/packages/tests-devel/marked.Rcheck/00LOCK-marked/00new/marked/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (marked)