* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/mRMRe.Rcheck’ * using R Under development (unstable) (2024-04-05 r86344) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘mRMRe/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mRMRe’ version ‘2.1.2.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mRMRe’ can be installed ... [24s/24s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/mRMRe-00install.html' for details. * used C++ compiler: ‘g++-13 (GCC) 13.2.0’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [18s/23s] OK * checking Rd files ... NOTE checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup? 16 | \item{X}{Vector of type {numeric, ordered factor, or Surv}.} | ^ checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup? 17 | \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.} | ^ checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup? 18 | \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.} | ^ checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup? 19 | \item{strata}{Vector of type {factor} corresponding to the sample strata.} | ^ checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup? 20 | \item{weights}{Vector of type {numeric} corresponding to the sample weights.} | ^ checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup? 24 | \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}. You can specify just the initial letter.} | ^ checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup? 20 | have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables. | ^ checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup? 20 | have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables. | ^ checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup? 22 | \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided | ^ checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup? 25 | \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided | ^ checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup? 28 | \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between | ^ checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup? 34 | using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported. | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [21s/24s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [24s/34s] OK * checking PDF version of manual ... [8s/14s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE