* installing *source* package ‘lotri’ ...
** package ‘lotri’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/lotri/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c asLotriMat.c -o asLotriMat.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c lotriBounds.c -o lotriBounds.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c lotriLstToMat.c -o lotriLstToMat.o
In file included from lotriLstToMat.c:1:
In function 'setStrElt',
    inlined from 'lotriLstToMatFillInMatrixBand' at lotriLstToMat.h:97:4,
    inlined from 'lotriLstToMatFillInFullMatrix' at lotriLstToMat.h:131:5,
    inlined from '_lotriLstToMat' at lotriLstToMat.c:178:3:
matlist.h:123:5: warning: 'colnames' may be used uninitialized [-Wmaybe-uninitialized]
  123 |     SET_STRING_ELT(retN, curBand+j, STRING_ELT(colnames, j));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from matlist.h:186:
lotriLstToMat.h: In function '_lotriLstToMat':
lotriLstToMat.h:108:25: note: 'colnames' was declared here
  108 |   SEXP sameS, dimnames, colnames, curFixed = R_NilValue;
      |                         ^~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c lotriNest.c -o lotriNest.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c lotriProp.c -o lotriProp.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c matlist.c -o matlist.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o lotri.so asLotriMat.o lotriBounds.o lotriLstToMat.o lotriNest.o lotriProp.o matlist.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/lotri/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/lotri/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/lotri/src'
installing to /data/gannet/ripley/R/packages/tests-devel/lotri.Rcheck/00LOCK-lotri/00new/lotri/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lotri)