• using R Under development (unstable) (2018-04-21 r74624)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘kdetrees/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘kdetrees’ version ‘0.1.5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘kdetrees’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  as.matrix.multiPhylo : tip2tip: no visible global function definition
    for ‘cophenetic’
  bw.nn : <anonymous>: no visible global function definition for
    ‘quantile’
  dist.diss: no visible binding for global variable ‘median’
  dist.diss: no visible global function definition for ‘dist’
  hist.kdetrees: no visible binding for global variable ‘density’
  kdetrees : cutoff: no visible global function definition for ‘quantile’
  kdetrees.complete: no visible global function definition for ‘plot’
  kdetrees.complete: no visible global function definition for ‘hist’
  kdetrees.complete: no visible global function definition for
    ‘write.csv’
  plot.kdetrees: no visible binding for global variable ‘density’
  Undefined global functions or variables:
    cophenetic density dist hist median plot quantile write.csv
  Consider adding
    importFrom("graphics", "hist", "plot")
    importFrom("stats", "cophenetic", "density", "dist", "median",
               "quantile")
    importFrom("utils", "write.csv")
  to your NAMESPACE file.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [12s/14s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [10s/19s] OK
• checking PDF version of manual ... OK
• DONE

Status: 1 NOTE