* installing *source* package ‘intrinsicFRP’ ...
** package ‘intrinsicFRP’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/intrinsicFRP/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c adaptive_weights.cpp -o adaptive_weights.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c fgx_three_pass_covariance.cpp -o fgx_three_pass_covariance.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c frp.cpp -o frp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c gkr_factor_screening.cpp -o gkr_factor_screening.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c hac_covariance.cpp -o hac_covariance.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c hj_misspecification_distance.cpp -o hj_misspecification_distance.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c identification_tests.cpp -o identification_tests.o
fgx_three_pass_covariance.cpp: In function 'arma::mat FGXThreePassCovarianceCpp(const arma::mat&, const arma::mat&, const arma::mat&, const arma::vec&)':
fgx_three_pass_covariance.cpp:46:25: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
   46 |   for (int lag = 1; lag <= n_observations; ++lag) {
      |                     ~~~~^~~~~~~~~~~~~~~~~
fgx_three_pass_covariance.cpp:50:27: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
   50 |     for (int tt = lag; tt < n_observations; ++tt) {
      |                        ~~~^~~~~~~~~~~~~~~~
fgx_three_pass_covariance.cpp: In function 'arma::mat FGXThreePassCovarianceNoControlsCpp(const arma::mat&, const arma::mat&, const arma::vec&)':
fgx_three_pass_covariance.cpp:98:25: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
   98 |   for (int lag = 1; lag <= n_observations; ++lag) {
      |                     ~~~~^~~~~~~~~~~~~~~~~
fgx_three_pass_covariance.cpp:102:27: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  102 |     for (int tt = lag; tt < n_observations; ++tt) {
      |                        ~~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c oracle_tfrp.cpp -o oracle_tfrp.o
hac_covariance.cpp: In function 'arma::mat HACCovarianceMatrixCpp(arma::mat&, bool)':
hac_covariance.cpp:33:25: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
   33 |   for (int lag = 1; lag <= n_lags; ++lag) {
      |                     ~~~~^~~~~~~~~
hac_covariance.cpp:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
   41 |   for (int lag = 1; lag <= n_lags; ++lag) {
      |                     ~~~~^~~~~~~~~
hac_covariance.cpp: In function 'arma::vec HACStandardErrorsCpp(arma::mat&, bool)':
hac_covariance.cpp:88:25: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
   88 |   for (int lag = 1; lag <= n_lags; ++lag) {
      |                     ~~~~^~~~~~~~~
hac_covariance.cpp:94:29: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
   94 |     for (int obs = lag; obs < n_observations; ++obs) {
      |                         ~~~~^~~~~~~~~~~~~~~~
hac_covariance.cpp: In function 'double HACVarianceCpp(arma::vec&, bool)':
hac_covariance.cpp:139:25: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  139 |   for (int lag = 1; lag <= n_lags; ++lag) {
      |                     ~~~~^~~~~~~~~
hac_covariance.cpp: In function 'void HACPrewhiteningCpp(arma::mat&, arma::vec&)':
hac_covariance.cpp:191:25: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  191 |   for (int col = 0; col < series.n_cols; ++col) {
      |                     ~~~~^~~~~~~~~~~~~~~
hac_covariance.cpp: In function 'void HACRevertPrewhiteningCpp(const arma::vec&, arma::rowvec&)':
hac_covariance.cpp:272:25: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  272 |   for (int idx = 0; idx < hac_covariance.n_elem; ++idx) {
      |                     ~~~~^~~~~~~~~~~~~~~~~~~~~~~
gkr_factor_screening.cpp: In function 'Rcpp::List GKRFactorScreeningCpp(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::vec&, double, bool)':
gkr_factor_screening.cpp:52:25: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   52 |   for (int idx = 0; idx < factors.n_cols; ++idx) {
      |                     ~~~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c sdf_coefficients.cpp -o sdf_coefficients.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c tfrp.cpp -o tfrp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c tuning.cpp -o tuning.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utils.cpp -o utils.o
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o intrinsicFRP.so RcppExports.o adaptive_weights.o fgx_three_pass_covariance.o frp.o gkr_factor_screening.o hac_covariance.o hj_misspecification_distance.o identification_tests.o oracle_tfrp.o sdf_coefficients.o tfrp.o tuning.o utils.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/intrinsicFRP/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/intrinsicFRP/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/intrinsicFRP/src'
installing to /data/gannet/ripley/R/packages/tests-devel/intrinsicFRP.Rcheck/00LOCK-intrinsicFRP/00new/intrinsicFRP/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (intrinsicFRP)