* installing *source* package ‘interpolation’ ...
** package ‘interpolation’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/interpolation/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DCGAL_HEADER_ONLY=1 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/cstdfloat.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/float128_functions.hpp:15,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/fpclassify.hpp:13,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/default_ops.hpp:15,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:12,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/number.hpp:12,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/boost_mp.h:32,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Number_types/internal/Exact_type_selector.h:27,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_kernel_selector.h:26,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Filtered_kernel.h:22,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:21,
from interpolation_types.h:7,
from RcppExports.cpp:4:
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:714:16: warning: non-standard suffix on floating constant [-Wpedantic]
714 | else if (x == BOOST_FLOAT128_C(0.0))
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:717:16: warning: non-standard suffix on floating constant [-Wpedantic]
717 | if (::BOOST_CSTDFLOAT_FLOAT128_FABS(x) < BOOST_CSTDFLOAT_FLOAT128_MIN)
| ^~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DCGAL_HEADER_ONLY=1 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c interpolation.cpp -o interpolation.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/cstdfloat.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/float128_functions.hpp:15,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/fpclassify.hpp:13,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/default_ops.hpp:15,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:12,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/number.hpp:12,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/boost_mp.h:32,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Number_types/internal/Exact_type_selector.h:27,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_kernel_selector.h:26,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Filtered_kernel.h:22,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:21,
from interpolation_types.h:7,
from interpolation.cpp:2:
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:714:16: warning: non-standard suffix on floating constant [-Wpedantic]
714 | else if (x == BOOST_FLOAT128_C(0.0))
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:717:16: warning: non-standard suffix on floating constant [-Wpedantic]
717 | if (::BOOST_CSTDFLOAT_FLOAT128_FABS(x) < BOOST_CSTDFLOAT_FLOAT128_MIN)
| ^~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/vector_property_map.hpp:14,
from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/property_map.hpp:598,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/property_map.h:18,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Spatial_sort_traits_adapter_2.h:19,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Triangulation_2.h:38,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Delaunay_triangulation_2.h:19,
from interpolation_types.h:8:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/local/gcc13/include/c++/13.2.0/bits/std_thread.h:43,
from /usr/local/gcc13/include/c++/13.2.0/thread:45,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/config.h:425,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/basic.h:21,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Cartesian/Cartesian_base.h:20,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Simple_cartesian.h:20,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:20:
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
508 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
521 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
604 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
613 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
615 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/vector_property_map.hpp:14,
from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/property_map.hpp:598,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/property_map.h:18,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Spatial_sort_traits_adapter_2.h:19,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Triangulation_2.h:38,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Delaunay_triangulation_2.h:19,
from interpolation_types.h:8:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/local/gcc13/include/c++/13.2.0/bits/std_thread.h:43,
from /usr/local/gcc13/include/c++/13.2.0/thread:45,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/config.h:425,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/basic.h:21,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Cartesian/Cartesian_base.h:20,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Simple_cartesian.h:20,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:20:
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
508 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
521 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
604 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
613 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
615 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
interpolation.cpp: In function 'Rcpp::NumericVector interpolate_sibson(Rcpp::XPtr<std::pair<CGAL::Delaunay_triangulation_2<CGAL::Epick>, std::pair<std::map<CGAL::Point_2<CGAL::Epick>, double, CGAL::CartesianKernelFunctors::Less_xy_2<CGAL::internal::Static_filters<CGAL::Filtered_kernel_base<CGAL::Type_equality_wrapper<CGAL::Cartesian_base_no_ref_count<double, CGAL::Epick>, CGAL::Epick> > > > >, std::map<CGAL::Point_2<CGAL::Epick>, CGAL::Vector_2<CGAL::Epick>, CGAL::CartesianKernelFunctors::Less_xy_2<CGAL::internal::Static_filters<CGAL::Filtered_kernel_base<CGAL::Type_equality_wrapper<CGAL::Cartesian_base_no_ref_count<double, CGAL::Epick>, CGAL::Epick> > > > > > > >, Rcpp::NumericMatrix)':
interpolation.cpp:190:42: warning: typedef 'Value_access' locally defined but not used [-Wunused-local-typedefs]
190 | typedef CGAL::Data_access<Coord_field> Value_access;
| ^~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o interpolation.so RcppExports.o interpolation.o -lgmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/interpolation/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/interpolation/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/interpolation/src'
installing to /data/gannet/ripley/R/packages/tests-devel/interpolation.Rcheck/00LOCK-interpolation/00new/interpolation/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (interpolation)