* installing *source* package ‘hdpGLM’ ... ** package ‘hdpGLM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/hdpGLM/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c src_dpGLM.cpp -o src_dpGLM.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c src_gibbs_gaussian.cpp -o src_gibbs_gaussian.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c src_hdpGLM.cpp -o src_hdpGLM.o src_dpGLM.cpp: In function 'arma::mat dpGLM_update_countZik(arma::mat, arma::mat)': src_dpGLM.cpp:60:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 60 | for(int i = 0; i < Z.n_rows; i++){ | ~~^~~~~~~~~~ src_dpGLM.cpp: In function 'arma::mat dpGLM_get_pik(arma::mat)': src_dpGLM.cpp:68:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 68 | for(int i = 0; i < countZik.n_rows; i++){ | ~~^~~~~~~~~~~~~~~~~ src_dpGLM.cpp: In function 'arma::mat dpGLM_get_theta_active(arma::mat, arma::colvec)': src_dpGLM.cpp:77:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 77 | for(int i = 0; i < Zstar.n_rows; i++){ | ~~^~~~~~~~~~~~~~ src_dpGLM.cpp: In function 'arma::mat dpGLM_get_inits(int, int, Rcpp::String, Rcpp::List)': src_dpGLM.cpp:101:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 101 | for(int d = 0; d < beta.n_cols; d++){ | ~~^~~~~~~~~~~~~ src_dpGLM.cpp: In function 'Rcpp::List dpGLM_mcmc(arma::colvec, arma::mat, arma::colvec, int, Rcpp::List, Rcpp::String, Rcpp::List, double, int, int, int)': src_dpGLM.cpp:196:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 196 | for(int i = 0; i < theta_new.n_rows; i++){ | ~~^~~~~~~~~~~~~~~~~~ src_gibbs_gaussian.cpp: In function 'arma::mat dpGLM_update_theta_gaussian(arma::colvec, arma::mat, arma::colvec, int, arma::mat, Rcpp::List)': src_gibbs_gaussian.cpp:28:20: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 28 | for(int i = 0; i < Zstar.size(); i++){ | ~~^~~~~~~~~~~~~~ src_gibbs_gaussian.cpp:65:20: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 65 | for(int i = 0; i < Zstar_complementar.size(); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src_gibbs_gaussian.cpp: In function 'arma::mat hdpGLM_update_theta_gaussian(arma::colvec, arma::mat, arma::mat, arma::colvec, arma::colvec, int, arma::mat, arma::mat, Rcpp::List)': src_gibbs_gaussian.cpp:113:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 113 | for(int i = 0; i < Zjstar.size(); i++){ | ~~^~~~~~~~~~~~~~~ src_gibbs_gaussian.cpp:158:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 158 | for(int i = 0; i < Zjstar_complementar.size(); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ src_gibbs_gaussian.cpp:93:7: warning: unused variable 'Dw' [-Wunused-variable] 93 | int Dw = W.n_cols - 1; | ^~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c src_hmc.cpp -o src_hmc.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c src_hmc_binomial.cpp -o src_hmc_binomial.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c src_hmc_multinomial.cpp -o src_hmc_multinomial.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c src_pi_z_update.cpp -o src_pi_z_update.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c src_utils.cpp -o src_utils.o src_hmc_binomial.cpp: In function 'arma::colvec grad_U_bin(arma::colvec, Rcpp::List)': src_hmc_binomial.cpp:40:7: warning: unused variable 'n' [-Wunused-variable] 40 | int n = Xk.n_rows; | ^ src_hmc_binomial.cpp: In function 'arma::colvec q_bin(arma::colvec, Rcpp::List)': src_hmc_binomial.cpp:64:7: warning: unused variable 'ncols' [-Wunused-variable] 64 | int ncols = Sigma_beta.n_cols; | ^~~~~ src_hmc_binomial.cpp: In function 'arma::mat dpGLM_update_theta_binomial(arma::colvec, arma::mat, arma::colvec, int, arma::mat, Rcpp::List, double, int, int, Rcpp::String)': src_hmc_binomial.cpp:87:20: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 87 | for(int i = 0; i < Zstar.size(); i++){ | ~~^~~~~~~~~~~~~~ src_hmc_binomial.cpp:114:20: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 114 | for(int i = 0; i < Zstar_complementar.size(); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src_pi_z_update.cpp: In function 'arma::vec dpGLM_update_pi(arma::mat, int, Rcpp::List)': src_pi_z_update.cpp:22:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 22 | for(int i = 0; i < Z.n_rows; i++) { | ~~^~~~~~~~~~ src_pi_z_update.cpp: In function 'arma::mat hdpGLM_update_pi(arma::colvec, arma::colvec, int, Rcpp::List)': src_pi_z_update.cpp:103:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 103 | for(int i = 0; i < Z.n_rows; i++) { | ~~^~~~~~~~~~ src_pi_z_update.cpp: In function 'arma::colvec hdpGLM_update_Z(arma::colvec, arma::mat, arma::mat, arma::colvec, arma::mat, int, arma::mat, Rcpp::String)': src_pi_z_update.cpp:130:22: warning: unused variable 'J' [-Wunused-variable] 130 | int J = conv_to::from( unique(theta.col(1)) ).n_rows; | ^ g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o hdpGLM.so RcppExports.o src_dpGLM.o src_gibbs_gaussian.o src_hdpGLM.o src_hmc.o src_hmc_binomial.o src_hmc_multinomial.o src_pi_z_update.o src_utils.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/hdpGLM/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/hdpGLM/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/hdpGLM/src' installing to /data/gannet/ripley/R/packages/tests-devel/hdpGLM.Rcheck/00LOCK-hdpGLM/00new/hdpGLM/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hdpGLM)