* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/greybox.Rcheck’ * using R Under development (unstable) (2024-04-05 r86344) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘greybox/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘greybox’ version ‘2.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘greybox’ can be installed ... [91s/108s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/greybox-00install.html' for details. * used C++ compiler: ‘g++-13 (GCC) 13.2.0’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [65s/83s] OK * checking Rd files ... NOTE checkRd: (-1) BCNormal.Rd:60: Lost braces; missing escapes or markup? 60 | f(y) = y^{lambda-1} 1/sqrt(2 pi) exp(-((y^lambda-1)/lambda -mu)^2 / (2 sigma^2)) | ^ checkRd: (-1) cramer.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) cramer.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) cramer.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) cramer.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mcor.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mcor.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mcor.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mcor.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mcor.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rmcb.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rmcb.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rmcb.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rmcb.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rmcb.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rmcb.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rmcb.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rmcb.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rmcb.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rmcb.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [78s/108s] OK * checking PDF version of manual ... [11s/19s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE