* installing *source* package ‘glmpath’ ...
** package ‘glmpath’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/glmpath/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c asa_cg.c -o asa_cg.o
asa_cg.c: In function 'asa_cg':
asa_cg.c:381:20: warning: unused variable 'mess5' [-Wunused-variable]
  381 |         const char mess5 [] = "   - the parameter epsilon in "
      |                    ^~~~~
asa_cg.c:380:20: warning: unused variable 'mess4' [-Wunused-variable]
  380 |         const char mess4 [] = "   - your gradient routine has an error" ;
      |                    ^~~~~
asa_cg.c:378:20: warning: unused variable 'mess2' [-Wunused-variable]
  378 |         const char mess2 [] = "   - your tolerance may be too strict: "
      |                    ^~~~~
asa_cg.c:377:20: warning: unused variable 'mess1' [-Wunused-variable]
  377 |         const char mess1 [] = "Possible causes of this error message:" ;
      |                    ^~~~~
asa_cg.c: In function 'asa_line':
asa_cg.c:1609:34: warning: 'fquad' may be used uninitialized [-Wmaybe-uninitialized]
 1609 |                 if ( Com->QuadOK && (phi <= fquad) )
      |                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
asa_cg.c:1507:37: note: 'fquad' was declared here
 1507 |            a0, da0, b0, db0, width, fquad, rho, minstep, maxstep,
      |                                     ^~~~~
asa_cg.c: In function 'asa_lineW':
asa_cg.c:1883:34: warning: 'fquad' may be used uninitialized [-Wmaybe-uninitialized]
 1883 |                 if ( Com->QuadOK && (phi <= fquad) )
      |                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
asa_cg.c:1776:37: note: 'fquad' was declared here
 1776 |            a0, da0, b0, db0, width, fquad, rho, psi, dpsi, minstep, maxstep,
      |                                     ^~~~~
asa_cg.c: In function 'asa_descent':
asa_cg.c:1373:17: warning: 'iter' may be used uninitialized [-Wmaybe-uninitialized]
 1373 |     Com->cgiter += iter ;
      |                 ^~
asa_cg.c:810:16: note: 'iter' was declared here
  810 |     int     i, iter, j, maxit, n, n5, nfree, nf, ng, nrestart,
      |                ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c glmpath_init.c -o glmpath_init.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c solve_coxpath.c -o solve_coxpath.o
solve_coxpath.c: In function 'coxpath_grad':
solve_coxpath.c:160:7: warning: unused variable 'iy' [-Wunused-variable]
  160 |   int iy, id, irept, ipenalty, i, j, k0, k, l;
      |       ^~
solve_coxpath.c: In function 'coxpath_valgrad':
solve_coxpath.c:303:7: warning: unused variable 'iy' [-Wunused-variable]
  303 |   int iy, id, irept, ipenalty, ieta, iwsum, ilp, i, j, k0, k, l;
      |       ^~
solve_coxpath.c: In function 'coxpath_value':
solve_coxpath.c:126:28: warning: 'wsum' may be used uninitialized [-Wmaybe-uninitialized]
  126 |       f += (-1.0 * mu[i] + log(wsum));
      |                            ^~~~~~~~~
solve_coxpath.c:52:44: note: 'wsum' was declared here
   52 |   double lamone, lamtwo, normone, normtwo, wsum, dwsum;
      |                                            ^~~~
solve_coxpath.c: In function 'coxpath_valgrad':
solve_coxpath.c:415:20: warning: 'wsum' may be used uninitialized [-Wmaybe-uninitialized]
  415 |       z[iwsum + i] = wsum;
      |       ~~~~~~~~~~~~~^~~~~~
solve_coxpath.c:306:44: note: 'wsum' was declared here
  306 |   double lamone, lamtwo, normone, normtwo, wsum, dwsum;
      |                                            ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c solve_glmpath.c -o solve_glmpath.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o glmpath.so asa_cg.o glmpath_init.o solve_coxpath.o solve_glmpath.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/glmpath/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/glmpath/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/glmpath/src'
installing to /data/gannet/ripley/R/packages/tests-devel/glmpath.Rcheck/00LOCK-glmpath/00new/glmpath/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glmpath)