Install log for 'fect'

* installing *source* package ‘fect’ ...
** package ‘fect’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/fect/src'
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include     -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include     -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c auxiliary.cpp -o auxiliary.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include     -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c binary_qr.cpp -o binary_qr.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include     -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c binary_sub.cpp -o binary_sub.o
binary_qr.cpp: In function 'Rcpp::List inter_fe_d_qr_ub(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::cube, arma::mat, int, int, int, double, double)':
binary_qr.cpp:293:53: warning: 'llh' may be used uninitialized [-Wmaybe-uninitialized]
  293 |   IC = (r*(N+T)-pow(double(r),2)+p)*log(obs)/(obs)-2*llh/(obs) ;
      |                                                    ~^~~~
binary_qr.cpp:197:10: note: 'llh' was declared here
  197 |   double llh;
      |          ^~~
binary_qr.cpp: In function 'Rcpp::List inter_fe_d_qr(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::cube, int, int, int, double, double)':
binary_qr.cpp:123:61: warning: 'llh' may be used uninitialized [-Wmaybe-uninitialized]
  123 |   IC = (r*(N+T)-pow(double(r),2)+p)*log(double(N*T))/(N*T)-2*llh/(N*T) ;
      |                                                            ~^~~~
binary_qr.cpp:34:10: note: 'llh' was declared here
   34 |   double llh ;
      |          ^~~
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include     -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c binary_svd.cpp -o binary_svd.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include     -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c fe_sub.cpp -o fe_sub.o
binary_svd.cpp: In function 'Rcpp::List inter_fe_d(arma::mat, arma::mat, arma::mat, arma::cube, int, int, int, double, double)':
binary_svd.cpp:107:61: warning: 'llh' may be used uninitialized [-Wmaybe-uninitialized]
  107 |   IC = (r*(N+T)-pow(double(r),2)+p)*log(double(N*T))/(N*T)-2*llh/(N*T) ;
      |                                                            ~^~~~
binary_svd.cpp:31:10: note: 'llh' was declared here
   31 |   double llh ;
      |          ^~~
binary_svd.cpp: In function 'Rcpp::List inter_fe_d_ub(arma::mat, arma::mat, arma::mat, arma::cube, arma::mat, int, int, int, double, double)':
binary_svd.cpp:256:53: warning: 'llh' may be used uninitialized [-Wmaybe-uninitialized]
  256 |   IC = (r*(N+T)-pow(double(r),2)+p)*log(obs)/(obs)-2*llh/(obs) ;
      |                                                    ~^~~~
binary_svd.cpp:173:10: note: 'llh' was declared here
  173 |   double llh;
      |          ^~~
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include     -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ife.cpp -o ife.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include     -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ife_sub.cpp -o ife_sub.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include     -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c mc.cpp -o mc.o
ife_sub.cpp: In function 'Rcpp::List fe_ad_covar_iter(arma::cube, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, int, double)':
ife_sub.cpp:94:20: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
   94 |   if (beta0.n_rows == p) {
      |       ~~~~~~~~~~~~~^~~~
ife_sub.cpp: In function 'Rcpp::List fe_ad_inter_covar_iter(arma::cube, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, int, int, int, int, double, double)':
ife_sub.cpp:296:20: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
  296 |   if (beta0.n_rows == p) {
      |       ~~~~~~~~~~~~~^~~~
g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o fect.so RcppExports.o auxiliary.o binary_qr.o binary_sub.o binary_svd.o fe_sub.o ife.o ife_sub.o mc.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/fect/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/fect/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/fect/src'
installing to /data/gannet/ripley/R/packages/tests-devel/fect.Rcheck/00LOCK-fect/00new/fect/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fect)