* installing *source* package ‘eaf’ ... ** package ‘eaf’ successfully unpacked and MD5 sums checked ** using staged installation checking for gsl-config... /usr/bin/gsl-config configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/eaf/src' gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c eaf/avl.c -o eaf/avl.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c eaf/eaf3d.c -o eaf/eaf3d.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c eaf/eaf.c -o eaf/eaf.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c eaf/io.c -o eaf/io.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mo-tools/hv_contrib.c -o mo-tools/hv_contrib.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mo-tools/hv.c -o mo-tools/hv.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mo-tools/pareto.c -o mo-tools/pareto.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mo-tools/whv.c -o mo-tools/whv.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mo-tools/whv_hype.c -o mo-tools/whv_hype.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c Reaf.c -o Reaf.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c Repsilon.c -o Repsilon.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c Rhv.c -o Rhv.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c Rnondominated.c -o Rnondominated.o gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o eaf.so eaf/avl.o eaf/eaf3d.o eaf/eaf.o eaf/io.o mo-tools/hv_contrib.o mo-tools/hv.o mo-tools/pareto.o mo-tools/whv.o mo-tools/whv_hype.o init.o Reaf.o Repsilon.o Rhv.o Rnondominated.o -lgsl -lgslcblas -lm make -C eaf all march=none CC="gcc-13" CFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes " OPT_CFLAGS="" WARN_CFLAGS="" DEBUG=0 EXE= make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/eaf/src/eaf' ---> Removing /data/gannet/ripley/R/packages/tests-devel/eaf/src/eaf//eaf <--- ---> Removing object files eaf.o io.o eaf_main.o eaf3d.o avl.o <--- make default make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/eaf/src/eaf' gcc-13 -DDEBUG=0 -DVERSION='"0.1svn292"' -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o eaf.o eaf.c gcc-13 -DDEBUG=0 -DVERSION='"0.1svn292"' -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o io.o io.c gcc-13 -DDEBUG=0 -DVERSION='"0.1svn292"' -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o eaf_main.o eaf_main.c gcc-13 -DDEBUG=0 -DVERSION='"0.1svn292"' -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o eaf3d.o eaf3d.c gcc-13 -DDEBUG=0 -DVERSION='"0.1svn292"' -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o avl.o avl.c --> Building /data/gannet/ripley/R/packages/tests-devel/eaf/src/eaf//eaf version 0.1svn292 <--- gcc-13 -o /data/gannet/ripley/R/packages/tests-devel/eaf/src/eaf//eaf eaf.o io.o eaf_main.o eaf3d.o avl.o -DDEBUG=0 -DVERSION='"0.1svn292"' -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -lm make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/eaf/src/eaf' make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/eaf/src/eaf' make -C mo-tools all march=none CC="gcc-13" CFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes " OPT_CFLAGS="" WARN_CFLAGS="" DEBUG=0 EXE= make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/eaf/src/mo-tools' ---> Removing ./igd <--- ---> Removing ./epsilon <--- ---> Removing ./dominatedsets <--- ---> Removing ./nondominated <--- ---> Removing ./ndsort <--- ---> Removing object files: igd.o epsilon.o dominatedsets.o nondominated.o io.o ndsort.o hv_contrib.o hv.o pareto.o whv.o whv_hype.o <--- make default make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/eaf/src/mo-tools' gcc-13 -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o igd.o igd.c gcc-13 -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o io.o io.c gcc-13 -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o epsilon.o epsilon.c gcc-13 -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o dominatedsets.o dominatedsets.c gcc-13 -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o nondominated.o nondominated.c gcc-13 -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o ndsort.o ndsort.c gcc-13 -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o hv_contrib.o hv_contrib.c gcc-13 -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o hv.o hv.c gcc-13 -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o pareto.o pareto.c gcc-13 -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o whv.o whv.c gcc-13 -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c -o whv_hype.o whv_hype.c --> Building igd version 1.0svn175 <--- gcc-13 -o igd igd.o io.o -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -lm --> Building epsilon version 1.0svn175 <--- gcc-13 -o epsilon epsilon.o io.o -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -lm --> Building dominatedsets version 1.0svn175 <--- gcc-13 -o dominatedsets dominatedsets.o io.o -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -lm --> Building nondominated version 1.0svn175 <--- gcc-13 -o nondominated nondominated.o io.o -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -lm --> Building ndsort version 1.0svn175 <--- gcc-13 -o ndsort ndsort.o pareto.o io.o hv_contrib.c hv.o -I/usr/include -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"unknown"' -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -lm make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/eaf/src/mo-tools' make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/eaf/src/mo-tools' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/eaf/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/eaf/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/eaf/src' installing via 'install.libs.R' to /data/gannet/ripley/R/packages/tests-devel/eaf.Rcheck/00LOCK-eaf/00new/eaf ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eaf)