* installing *source* package ‘dlm’ ...
** package ‘dlm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/dlm/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c arms-R.c -o arms-R.o
arms-R.c: In function 'invert':
arms-R.c:315:37: warning: unused variable 'z' [-Wunused-variable]
315 | double u,xl,xr,yl,yr,eyl,eyr,prop,z;
| ^
arms-R.c: In function 'meet':
arms-R.c:682:15: warning: 'gr' may be used uninitialized [-Wmaybe-uninitialized]
682 | dl = (grl - gr) * (q->pr->x - q->pl->x);
| ~~~~~^~~~~
arms-R.c:620:13: note: 'gr' was declared here
620 | double gl,gr,grl,dl,dr;
| ^~
arms-R.c:692:48: warning: 'dr' may be used uninitialized [-Wmaybe-uninitialized]
692 | q->y = (dl * q->pr->y + dr * q->pl->y + dl * dr)/(dl + dr);
| ~~~^~~~
arms-R.c:620:23: note: 'dr' was declared here
620 | double gl,gr,grl,dl,dr;
| ^~
arms-R.c: In function 'invert':
arms-R.c:368:6: warning: 'xl' may be used uninitialized [-Wmaybe-uninitialized]
368 | if ((p->x < xl) || (p->x > xr)) error("exit 1");
| ^
arms-R.c:315:12: note: 'xl' was declared here
315 | double u,xl,xr,yl,yr,eyl,eyr,prop,z;
| ^~
arms-R.c:368:19: warning: 'xr' may be used uninitialized [-Wmaybe-uninitialized]
368 | if ((p->x < xl) || (p->x > xr)) error("exit 1");
| ~~~~~~~~~~~~^~~~~~~~~~~~~~
arms-R.c:315:15: note: 'xr' was declared here
315 | double u,xl,xr,yl,yr,eyl,eyr,prop,z;
| ^~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dlm.c -o dlm.o
dlm.c: In function 'dlmFilter':
dlm.c:1312:56: warning: variable 'Dy' set but not used [-Wunused-but-set-variable]
1312 | *sqrtVinv, *a, *Ux_prior, *Dx_prior, *f, *Uy, *Dy,
| ^~
dlm.c:1312:51: warning: variable 'Uy' set but not used [-Wunused-but-set-variable]
1312 | *sqrtVinv, *a, *Ux_prior, *Dx_prior, *f, *Uy, *Dy,
| ^~
dlm.c: In function 'dlmFilter0':
dlm.c:1941:56: warning: variable 'Dy' set but not used [-Wunused-but-set-variable]
1941 | *sqrtVinv, *a, *Ux_prior, *Dx_prior, *f, *Uy, *Dy,
| ^~
dlm.c:1941:51: warning: variable 'Uy' set but not used [-Wunused-but-set-variable]
1941 | *sqrtVinv, *a, *Ux_prior, *Dx_prior, *f, *Uy, *Dy,
| ^~
dlm.c: In function 'dlmSmooth0':
dlm.c:2462:58: warning: unused variable 'UR' [-Wunused-variable]
2462 | double *sm, *smooth, *DS, *US, *sGG, *DC, *UC, *DR, *UR, *Ht, *C, *Rinv,
| ^~
dlm.c:2462:53: warning: unused variable 'DR' [-Wunused-variable]
2462 | double *sm, *smooth, *DS, *US, *sGG, *DC, *UC, *DR, *UR, *Ht, *C, *Rinv,
| ^~
dlm.c: In function 'dlmSmooth':
dlm.c:2769:58: warning: unused variable 'UR' [-Wunused-variable]
2769 | double *sm, *smooth, *DS, *US, *sGG, *DC, *UC, *DR, *UR, *Ht, *C, *Rinv,
| ^~
dlm.c:2769:53: warning: unused variable 'DR' [-Wunused-variable]
2769 | double *sm, *smooth, *DS, *US, *sGG, *DC, *UC, *DR, *UR, *Ht, *C, *Rinv,
| ^~
dlm.c:2768:9: warning: unused variable 'nr' [-Wunused-variable]
2768 | nr;
| ^~
dlm.c: In function 'dlmLL':
dlm.c:552:29: warning: 'good' may be used uninitialized [-Wmaybe-uninitialized]
552 | good[j++] = i;
| ^
dlm.c:91:34: note: 'good' was declared here
91 | numNA, *whereNA, numGood, *good, warn;
| ^~~~
dlm.c:571:45: warning: 'sqrtVTMP' may be used uninitialized [-Wmaybe-uninitialized]
571 | sqrtVTMP[i + j * m] = tmp * la_vt[i + j * max_m_p];
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dlm.c:99:8: note: 'sqrtVTMP' was declared here
99 | *sqrtVTMP, *sqrtVinvTMP, *tF_VinvTMP, eps;
| ^~~~~~~~
dlm.c:572:48: warning: 'sqrtVinvTMP' may be used uninitialized [-Wmaybe-uninitialized]
572 | sqrtVinvTMP[i + j * m] = tmp1 * la_vt[i + j * max_m_p];
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dlm.c:99:19: note: 'sqrtVinvTMP' was declared here
99 | *sqrtVTMP, *sqrtVinvTMP, *tF_VinvTMP, eps;
| ^~~~~~~~~~~
dlm.c:593:35: warning: 'tF_VinvTMP' may be used uninitialized [-Wmaybe-uninitialized]
593 | tF_VinvTMP[i + j * p] = tmp;
| ^
dlm.c:99:33: note: 'tF_VinvTMP' was declared here
99 | *sqrtVTMP, *sqrtVinvTMP, *tF_VinvTMP, eps;
| ^~~~~~~~~~
dlm.c:93:52: warning: 'sJGG' may be used uninitialized [-Wmaybe-uninitialized]
93 | stvW=INTEGER(tvW)[0], stvFV, *sJFF, *sJV, *sJGG, *sJW, nrJFF, nrJV, nrJGG, nrJW;
| ^~~~
dlm.c:93:77: warning: 'nrJGG' may be used uninitialized [-Wmaybe-uninitialized]
93 | stvW=INTEGER(tvW)[0], stvFV, *sJFF, *sJV, *sJGG, *sJW, nrJFF, nrJV, nrJGG, nrJW;
| ^~~~~
dlm.c:93:59: warning: 'sJW' may be used uninitialized [-Wmaybe-uninitialized]
93 | stvW=INTEGER(tvW)[0], stvFV, *sJFF, *sJV, *sJGG, *sJW, nrJFF, nrJV, nrJGG, nrJW;
| ^~~
dlm.c:310:27: warning: 'nrJW' may be used uninitialized [-Wmaybe-uninitialized]
310 | for (i = 0; i < nrJW; i++)
| ~~^~~~~~
dlm.c:93:84: note: 'nrJW' was declared here
93 | stvW=INTEGER(tvW)[0], stvFV, *sJFF, *sJV, *sJGG, *sJW, nrJFF, nrJV, nrJGG, nrJW;
| ^~~~
dlm.c: In function 'dlmLL0':
dlm.c:1106:29: warning: 'good' may be used uninitialized [-Wmaybe-uninitialized]
1106 | good[j++] = i;
| ^
dlm.c:753:34: note: 'good' was declared here
753 | numNA, *whereNA, numGood, *good, warn;
| ^~~~
dlm.c:1125:45: warning: 'sqrtVTMP' may be used uninitialized [-Wmaybe-uninitialized]
1125 | sqrtVTMP[i + j * m] = tmp * la_vt[i + j * max_m_p];
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dlm.c:759:8: note: 'sqrtVTMP' was declared here
759 | *sqrtVTMP, *sqrtVinvTMP, *tF_VinvTMP, eps;
| ^~~~~~~~
dlm.c:1126:48: warning: 'sqrtVinvTMP' may be used uninitialized [-Wmaybe-uninitialized]
1126 | sqrtVinvTMP[i + j * m] = tmp1 * la_vt[i + j * max_m_p];
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dlm.c:759:19: note: 'sqrtVinvTMP' was declared here
759 | *sqrtVTMP, *sqrtVinvTMP, *tF_VinvTMP, eps;
| ^~~~~~~~~~~
dlm.c:1147:35: warning: 'tF_VinvTMP' may be used uninitialized [-Wmaybe-uninitialized]
1147 | tF_VinvTMP[i + j * p] = tmp;
| ^
dlm.c:759:33: note: 'tF_VinvTMP' was declared here
759 | *sqrtVTMP, *sqrtVinvTMP, *tF_VinvTMP, eps;
| ^~~~~~~~~~
dlm.c: In function 'dlmFilter':
dlm.c:1762:29: warning: 'good' may be used uninitialized [-Wmaybe-uninitialized]
1762 | good[j++] = i;
| ^
dlm.c:1307:36: note: 'good' was declared here
1307 | numNA, *whereNA, numGood, *good, warn;
| ^~~~
dlm.c:1315:10: warning: 'sqrtVinvTMP' may be used uninitialized [-Wmaybe-uninitialized]
1315 | *sqrtVinvTMP, *tF_VinvTMP, eps;
| ^~~~~~~~~~~
dlm.c:1802:35: warning: 'tF_VinvTMP' may be used uninitialized [-Wmaybe-uninitialized]
1802 | tF_VinvTMP[i + j * p] = tmp;
| ^
dlm.c:1315:24: note: 'tF_VinvTMP' was declared here
1315 | *sqrtVinvTMP, *tF_VinvTMP, eps;
| ^~~~~~~~~~
dlm.c:1309:52: warning: 'sJGG' may be used uninitialized [-Wmaybe-uninitialized]
1309 | stvW=INTEGER(tvW)[0], stvFV, *sJFF, *sJV, *sJGG, *sJW, nrJFF, nrJV, nrJGG, nrJW;
| ^~~~
dlm.c:1309:77: warning: 'nrJGG' may be used uninitialized [-Wmaybe-uninitialized]
1309 | stvW=INTEGER(tvW)[0], stvFV, *sJFF, *sJV, *sJGG, *sJW, nrJFF, nrJV, nrJGG, nrJW;
| ^~~~~
dlm.c:1309:59: warning: 'sJW' may be used uninitialized [-Wmaybe-uninitialized]
1309 | stvW=INTEGER(tvW)[0], stvFV, *sJFF, *sJV, *sJGG, *sJW, nrJFF, nrJV, nrJGG, nrJW;
| ^~~
dlm.c:1536:27: warning: 'nrJW' may be used uninitialized [-Wmaybe-uninitialized]
1536 | for (i = 0; i < nrJW; i++)
| ~~^~~~~~
dlm.c:1309:84: note: 'nrJW' was declared here
1309 | stvW=INTEGER(tvW)[0], stvFV, *sJFF, *sJV, *sJGG, *sJW, nrJFF, nrJV, nrJGG, nrJW;
| ^~~~
dlm.c: In function 'dlmFilter0':
dlm.c:2285:29: warning: 'good' may be used uninitialized [-Wmaybe-uninitialized]
2285 | good[j++] = i;
| ^
dlm.c:1938:36: note: 'good' was declared here
1938 | numNA, *whereNA, numGood, *good, warn;
| ^~~~
dlm.c:1944:10: warning: 'sqrtVinvTMP' may be used uninitialized [-Wmaybe-uninitialized]
1944 | *sqrtVinvTMP, *tF_VinvTMP, eps;
| ^~~~~~~~~~~
dlm.c:2325:35: warning: 'tF_VinvTMP' may be used uninitialized [-Wmaybe-uninitialized]
2325 | tF_VinvTMP[i + j * p] = tmp;
| ^
dlm.c:1944:24: note: 'tF_VinvTMP' was declared here
1944 | *sqrtVinvTMP, *tF_VinvTMP, eps;
| ^~~~~~~~~~
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o dlm.so arms-R.o dlm.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/dlm/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/dlm/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/dlm/src'
installing to /data/gannet/ripley/R/packages/tests-devel/dlm.Rcheck/00LOCK-dlm/00new/dlm/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dlm)