* installing *source* package ‘cxhull’ ...
** package ‘cxhull’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/cxhull/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c convexhull.c -o convexhull.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cxhull_edges.c -o cxhull_edges.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c geom2_r.c -o geom2_r.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c geom_r.c -o geom_r.o
geom_r.c: In function 'qh_projectpoint':
geom_r.c:974:10: warning: variable 'freelistp' set but not used [-Wunused-but-set-variable]
974 | void** freelistp; /* used if !qh_NOmem by qh_memalloc_() */
| ^~~~~~~~~
geom_r.c: In function 'qh_setfacetplane':
geom_r.c:1011:10: warning: variable 'freelistp' set but not used [-Wunused-but-set-variable]
1011 | void** freelistp; /* used if !qh_NOmem by qh_memalloc_() */
| ^~~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c global_r.c -o global_r.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c io_r.c -o io_r.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c libqhull_r.c -o libqhull_r.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mem_r.c -o mem_r.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c merge_r.c -o merge_r.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c poly2_r.c -o poly2_r.o
merge_r.c: In function 'qh_all_merges':
merge_r.c:222:10: warning: variable 'freelistp' set but not used [-Wunused-but-set-variable]
222 | void** freelistp; /* used if !qh_NOmem by qh_memfree_() */
| ^~~~~~~~~
merge_r.c: In function 'qh_appendmergeset':
merge_r.c:330:10: warning: variable 'freelistp' set but not used [-Wunused-but-set-variable]
330 | void** freelistp; /* used if !qh_NOmem by qh_memalloc_() */
| ^~~~~~~~~
poly2_r.c: In function 'qh_delridge':
poly2_r.c:1291:10: warning: variable 'freelistp' set but not used [-Wunused-but-set-variable]
1291 | void** freelistp; /* used if !qh_NOmem by qh_memfree_() */
| ^~~~~~~~~
merge_r.c: In function 'qh_mergecycle_ridges':
merge_r.c:2198:10: warning: variable 'freelistp' set but not used [-Wunused-but-set-variable]
2198 | void** freelistp; /* used if !qh_NOmem by qh_memfree_() */
| ^~~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c poly_r.c -o poly_r.o
poly_r.c: In function 'qh_delfacet':
poly_r.c:253:10: warning: variable 'freelistp' set but not used [-Wunused-but-set-variable]
253 | void** freelistp; /* used if !qh_NOmem by qh_memfree_() */
| ^~~~~~~~~
poly_r.c: In function 'qh_makenew_nonsimplicial':
poly_r.c:591:10: warning: variable 'freelistp' set but not used [-Wunused-but-set-variable]
591 | void** freelistp; /* used if !qh_NOmem by qh_memfree_() */
| ^~~~~~~~~
poly_r.c: In function 'qh_newfacet':
poly_r.c:1061:10: warning: variable 'freelistp' set but not used [-Wunused-but-set-variable]
1061 | void** freelistp; /* used if !qh_NOmem by qh_memalloc_() */
| ^~~~~~~~~
poly_r.c: In function 'qh_newridge':
poly_r.c:1093:10: warning: variable 'freelistp' set but not used [-Wunused-but-set-variable]
1093 | void** freelistp; /* used if !qh_NOmem by qh_memalloc_() */
| ^~~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c qset_r.c -o qset_r.o
qset_r.c: In function 'qh_setfree':
qset_r.c:723:10: warning: variable 'freelistp' set but not used [-Wunused-but-set-variable]
723 | void** freelistp; /* used if !qh_NOmem by qh_memfree_() */
| ^~~~~~~~~
qset_r.c: In function 'qh_setnew':
qset_r.c:924:10: warning: variable 'freelistp' set but not used [-Wunused-but-set-variable]
924 | void** freelistp; /* used if !qh_NOmem by qh_memalloc_() */
| ^~~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c random_r.c -o random_r.o
random_r.c: In function 'qh_argv_to_command':
random_r.c:84:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
84 | }else
| ^~~~
random_r.c:86:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
86 | strcat(command, s);
| ^~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c stat_r.c -o stat_r.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c user_r.c -o user_r.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c usermem_r.c -o usermem_r.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c userprintf_r.c -o userprintf_r.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c utils.c -o utils.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o cxhull.so convexhull.o cxhull_edges.o geom2_r.o geom_r.o global_r.o init.o io_r.o libqhull_r.o mem_r.o merge_r.o poly2_r.o poly_r.o qset_r.o random_r.o stat_r.o user_r.o usermem_r.o userprintf_r.o utils.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/cxhull/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/cxhull/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/cxhull/src'
installing to /data/gannet/ripley/R/packages/tests-devel/cxhull.Rcheck/00LOCK-cxhull/00new/cxhull/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cxhull)