* installing *source* package ‘coconots’ ...
** package ‘coconots’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/coconots/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cfunctions.cpp -o cfunctions.o
cfunctions.cpp: In function 'double likelihoodGP2(double, double, double, double, double, double, int, int, int, std::vector<int>)':
cfunctions.cpp:37:10: warning: unused variable 'nain' [-Wunused-variable]
   37 |   double nain;
      |          ^~~~
cfunctions.cpp: In function 'double likelihoodGP1(double, double, double, double, int, int, std::vector<int>)':
cfunctions.cpp:95:10: warning: unused variable 'gry' [-Wunused-variable]
   95 |   double gry;
      |          ^~~
cfunctions.cpp: In function 'std::vector<int> simGP2(double, double, double, double, double, double, int, int, int, int, std::vector<int>, std::vector<double>, std::vector<int>)':
cfunctions.cpp:138:10: warning: unused variable 'nain' [-Wunused-variable]
  138 |   double nain;
      |          ^~~~
cfunctions.cpp: In function 'std::vector<int> simGP1(double, double, double, double, int, int, int, std::vector<int>, std::vector<double>, std::vector<int>)':
cfunctions.cpp:197:10: warning: unused variable 'gry' [-Wunused-variable]
  197 |   double gry;
      |          ^~~
cfunctions.cpp:201:10: warning: unused variable 'mlef' [-Wunused-variable]
  201 |   double mlef = 0.0;
      |          ^~~~
cfunctions.cpp: In function 'double Pyz(int, int, double, double, double, double, double)':
cfunctions.cpp:353:10: warning: unused variable 'beta2' [-Wunused-variable]
  353 |   double beta2 = lambda * U *alpha2;
      |          ^~~~~
cfunctions.cpp: In function 'std::vector<int> simGP2cov(double, double, double, double, double, Rcpp::NumericVector, int, int, int, int, std::vector<int>, Rcpp::NumericMatrix, std::vector<double>, std::vector<int>)':
cfunctions.cpp:383:10: warning: unused variable 'nain' [-Wunused-variable]
  383 |   double nain;
      |          ^~~~
cfunctions.cpp: In function 'double likelihoodGP2cov(double, double, double, double, double, Rcpp::NumericVector, int, int, int, std::vector<int>, Rcpp::NumericMatrix)':
cfunctions.cpp:493:10: warning: unused variable 'nain' [-Wunused-variable]
  493 |   double nain;
      |          ^~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o coconots.so RcppExports.o cfunctions.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/coconots/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/coconots/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/coconots/src'
installing to /data/gannet/ripley/R/packages/tests-devel/coconots.Rcheck/00LOCK-coconots/00new/coconots/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (coconots)