* installing *source* package ‘cmenet’ ...
** package ‘cmenet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/cmenet/src'
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cme.cpp -o cme.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c getModelMtx.cpp -o getModelMtx.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
cme.cpp: In function 'bool coord_des_onerun(int, int, Rcpp::NumericVector&, Rcpp::NumericVector&, bool, double, double, std::vector<double>&, std::vector<double>&, std::vector<double>&, std::vector<double>&, std::vector<bool>&, std::vector<bool>&, std::vector<double>&, std::vector<double>&, std::vector<double>&)':
cme.cpp:307:11: warning: unused variable 'condind' [-Wunused-variable]
  307 |       int condind = 0; //index for condition
      |           ^~~~~~~
cme.cpp: In function 'Rcpp::List cme(Rcpp::NumericMatrix&, Rcpp::NumericMatrix&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, double, int, int, int, bool)':
cme.cpp:522:10: warning: unused variable 'cur_beta' [-Wunused-variable]
  522 |   double cur_beta = 0.0; //running beta
      |          ^~~~~~~~
cme.cpp:529:8: warning: unused variable 'kkt_bool' [-Wunused-variable]
  529 |   bool kkt_bool;
      |        ^~~~~~~~
cme.cpp:557:10: warning: unused variable 'inprod' [-Wunused-variable]
  557 |   double inprod = 0.0; //inner product
      |          ^~~~~~
cme.cpp:558:10: warning: unused variable 'thresh' [-Wunused-variable]
  558 |   double thresh = 0.0; //threshold for screening
      |          ^~~~~~
g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o cmenet.so RcppExports.o cme.o getModelMtx.o init.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/cmenet/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/cmenet/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/cmenet/src'
installing to /data/gannet/ripley/R/packages/tests-devel/cmenet.Rcheck/00LOCK-cmenet/00new/cmenet/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cmenet)