• using R Under development (unstable) (2025-10-31 r88977)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)     GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘clustrd/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘clustrd’ version ‘1.4.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘clustrd’ can be installed ... [38s/109s] OK See the install log for details.
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [8s/19s] OK
• checking whether the package can be loaded with stated dependencies ... [7s/15s] OK
• checking whether the package can be unloaded cleanly ... [8s/26s] OK
• checking whether the namespace can be loaded with stated dependencies ... [7s/19s] OK
• checking whether the namespace can be unloaded cleanly ... [8s/21s] OK
• checking loading without being on the library search path ... [9s/18s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [61s/171s] OK
• checking Rd files ... NOTE checkRd: (-1) global_bootclus.Rd:38: Lost braces; missing escapes or markup?     38 | \emph{Step 1. Resampling:} Draw bootstrap samples S_i and T_i of size \emph{n} from the data and use the original data, X, as evaluation set E_i = X. Apply the clustering method of choice to S_i and T_i and obtain C^{S_i} and C^{T_i}.        | ^ checkRd: (-1) global_bootclus.Rd:38: Lost braces; missing escapes or markup?     38 | \emph{Step 1. Resampling:} Draw bootstrap samples S_i and T_i of size \emph{n} from the data and use the original data, X, as evaluation set E_i = X. Apply the clustering method of choice to S_i and T_i and obtain C^{S_i} and C^{T_i}.        | ^ checkRd: (-1) global_bootclus.Rd:40: Lost braces; missing escapes or markup?     40 | \emph{Step 2. Mapping:} Assign each observation x_i to the closest centers of C^{S_i} and C^{T_i} using Euclidean distance, resulting in partitions C^{XS_i} and C^{XT_i}, where C^{XS_i} is the partition of the original data, X, predicted from clustering bootstrap sample S_i (same for T_i and C^{XT_i}).        | ^ checkRd: (-1) global_bootclus.Rd:40: Lost braces; missing escapes or markup?     40 | \emph{Step 2. Mapping:} Assign each observation x_i to the closest centers of C^{S_i} and C^{T_i} using Euclidean distance, resulting in partitions C^{XS_i} and C^{XT_i}, where C^{XS_i} is the partition of the original data, X, predicted from clustering bootstrap sample S_i (same for T_i and C^{XT_i}).        | ^ checkRd: (-1) global_bootclus.Rd:40: Lost braces; missing escapes or markup?     40 | \emph{Step 2. Mapping:} Assign each observation x_i to the closest centers of C^{S_i} and C^{T_i} using Euclidean distance, resulting in partitions C^{XS_i} and C^{XT_i}, where C^{XS_i} is the partition of the original data, X, predicted from clustering bootstrap sample S_i (same for T_i and C^{XT_i}).        | ^ checkRd: (-1) global_bootclus.Rd:40: Lost braces; missing escapes or markup?     40 | \emph{Step 2. Mapping:} Assign each observation x_i to the closest centers of C^{S_i} and C^{T_i} using Euclidean distance, resulting in partitions C^{XS_i} and C^{XT_i}, where C^{XS_i} is the partition of the original data, X, predicted from clustering bootstrap sample S_i (same for T_i and C^{XT_i}).        | ^ checkRd: (-1) global_bootclus.Rd:40: Lost braces; missing escapes or markup?     40 | \emph{Step 2. Mapping:} Assign each observation x_i to the closest centers of C^{S_i} and C^{T_i} using Euclidean distance, resulting in partitions C^{XS_i} and C^{XT_i}, where C^{XS_i} is the partition of the original data, X, predicted from clustering bootstrap sample S_i (same for T_i and C^{XT_i}).        | ^ checkRd: (-1) global_bootclus.Rd:40: Lost braces; missing escapes or markup?     40 | \emph{Step 2. Mapping:} Assign each observation x_i to the closest centers of C^{S_i} and C^{T_i} using Euclidean distance, resulting in partitions C^{XS_i} and C^{XT_i}, where C^{XS_i} is the partition of the original data, X, predicted from clustering bootstrap sample S_i (same for T_i and C^{XT_i}).        | ^ checkRd: (-1) global_bootclus.Rd:53: Lost braces; missing escapes or markup?     53 | \item{clust1}{Partitions, C^{XS_i} of the original data, X, predicted from clustering bootstrap sample S_i (see Details)}        | ^ checkRd: (-1) global_bootclus.Rd:54: Lost braces; missing escapes or markup?     54 | \item{clust2}{Partitions, C^{XT_i} of the original data, X, predicted from clustering bootstrap sample T_i (see Details)}        | ^ checkRd: (-1) local_bootclus.Rd:37: Lost braces; missing escapes or markup?     37 | \emph{Step 1. Resampling:} Draw bootstrap samples S_i and T_i of size n from the data and use the original data as evaluation set E_i = X. Apply a joint dimension reduction and clustering method to S_i and T_i and obtain C^{S_i} and C^{T_i}.        | ^ checkRd: (-1) local_bootclus.Rd:37: Lost braces; missing escapes or markup?     37 | \emph{Step 1. Resampling:} Draw bootstrap samples S_i and T_i of size n from the data and use the original data as evaluation set E_i = X. Apply a joint dimension reduction and clustering method to S_i and T_i and obtain C^{S_i} and C^{T_i}.        | ^ checkRd: (-1) local_bootclus.Rd:39: Lost braces; missing escapes or markup?     39 | \emph{Step 2. Mapping}: Assign each observation x_i to the closest centers of C^{S_i} and C^{T_i} using Euclidean distance, resulting in partitions C^{XS_i} and C^{XT_i}.        | ^ checkRd: (-1) local_bootclus.Rd:39: Lost braces; missing escapes or markup?     39 | \emph{Step 2. Mapping}: Assign each observation x_i to the closest centers of C^{S_i} and C^{T_i} using Euclidean distance, resulting in partitions C^{XS_i} and C^{XT_i}.        | ^ checkRd: (-1) local_bootclus.Rd:39: Lost braces; missing escapes or markup?     39 | \emph{Step 2. Mapping}: Assign each observation x_i to the closest centers of C^{S_i} and C^{T_i} using Euclidean distance, resulting in partitions C^{XS_i} and C^{XT_i}.        | ^ checkRd: (-1) local_bootclus.Rd:39: Lost braces; missing escapes or markup?     39 | \emph{Step 2. Mapping}: Assign each observation x_i to the closest centers of C^{S_i} and C^{T_i} using Euclidean distance, resulting in partitions C^{XS_i} and C^{XT_i}.        | ^ checkRd: (-1) local_bootclus.Rd:41: Lost braces; missing escapes or markup?     41 | \emph{Step 3. Evaluation}: Obtain the maximum Jaccard agreement between each original cluster C_k and each one of the two bootstrap clusters, C_^k'{XS_i} and C_^k'{XT_i} as measure of agreement and stability, and take the average of each pair.        | ^ checkRd: (-1) local_bootclus.Rd:41: Lost braces; missing escapes or markup?     41 | \emph{Step 3. Evaluation}: Obtain the maximum Jaccard agreement between each original cluster C_k and each one of the two bootstrap clusters, C_^k'{XS_i} and C_^k'{XT_i} as measure of agreement and stability, and take the average of each pair.        | ^ checkRd: (-1) local_bootclus.Rd:54: Lost braces; missing escapes or markup?     54 | \item{clust1}{Partitions, C^{XS_i} of the original data, X, predicted from clustering bootstrap sample S_i (see Details)}        | ^ checkRd: (-1) local_bootclus.Rd:55: Lost braces; missing escapes or markup?     55 | \item{clust2}{Partitions, C^{XT_i} of the original data, X, predicted from clustering bootstrap sample T_i (see Details)}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [66s/189s] OK
• checking PDF version of manual ... [8s/14s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE