Install log for 'cartogramR'

* installing *source* package ‘cartogramR’ ...
** package ‘cartogramR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/cartogramR/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c caracmap.c -o caracmap.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c cartogram.c -o cartogram.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c cartogramR.c -o cartogramR.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c checkring.c -o checkring.o
In file included from checkring.c:13:
checkring.c: In function 'checkring':
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:25: warning: 'rlistcoord2' may be used uninitialized [-Wmaybe-uninitialized]
  371 | #define PROTECT(s)      Rf_protect(s)
      |                         ^~~~~~~~~~~~~
checkring.c:148:35: note: in expansion of macro 'PROTECT'
  148 |         if (change) rlistmulti2 = PROTECT(VECTOR_ELT(rlistcoord2, j));
      |                                   ^~~~~~~
checkring.c:86:8: note: 'rlistcoord2' was declared here
   86 |   SEXP rlistcoord2,  rcoordvert2, rlistmulti2;
      |        ^~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:371:25: warning: 'rlistmulti2' may be used uninitialized [-Wmaybe-uninitialized]
  371 | #define PROTECT(s)      Rf_protect(s)
      |                         ^~~~~~~~~~~~~
checkring.c:155:37: note: in expansion of macro 'PROTECT'
  155 |           if (change) rcoordvert2 = PROTECT(VECTOR_ELT(rlistmulti2, jj));
      |                                     ^~~~~~~
checkring.c:86:35: note: 'rlistmulti2' was declared here
   86 |   SEXP rlistcoord2,  rcoordvert2, rlistmulti2;
      |                                   ^~~~~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c dcn.c -o dcn.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c diff_integrate.c -o diff_integrate.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c ffb_integrate.c -o ffb_integrate.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c fill_with_density.c -o fill_with_density.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c geomcarto.c -o geomcarto.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c gridanalysis.c -o gridanalysis.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c inside_functions.c -o inside_functions.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c interpol2.c -o interpol2.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c invcarto.c -o invcarto.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c iocartogramR.c -o iocartogramR.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c makegraticule.c -o makegraticule.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c read_gen.c -o read_gen.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o cartogramR.so caracmap.o cartogram.o cartogramR.o checkring.o dcn.o diff_integrate.o ffb_integrate.o fill_with_density.o geomcarto.o gridanalysis.o init.o inside_functions.o interpol2.o invcarto.o iocartogramR.o makegraticule.o read_gen.o -lfftw3 -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/cartogramR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/cartogramR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/cartogramR/src'
installing to /data/gannet/ripley/R/packages/tests-devel/cartogramR.Rcheck/00LOCK-cartogramR/00new/cartogramR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cartogramR)