* installing *source* package ‘bsts’ ... ** package ‘bsts’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bsts/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c aggregate_time_series.cc -o aggregate_time_series.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bsts.cc -o bsts.o In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from model_manager.h:22, from bsts.cc:20: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from bsts.cc:22: create_state_model.h: In member function 'void BOOM::bsts::StateModelFactoryBase::InstallPostStateListElements()': create_state_model.h:89:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 89 | for (int i = 0; i < post_state_list_elements_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bsts.cc: In function 'SEXPREC* analysis_common_r_bsts_one_step_prediction_errors_(SEXP, SEXP, SEXP)': bsts.cc:211:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 211 | for (int i = 0; i < cutpoints.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ bsts.cc:217:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 217 | for (int i = 0; i < futures.size(); ++i) { | ~~^~~~~~~~~~~~~~~~ bsts.cc:223:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 223 | for (int i = 0; i < prediction_errors.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from model_manager.h:23: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bsts_init.cc -o bsts_init.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c create_dynamic_intercept_state_model.cpp -o create_dynamic_intercept_state_model.o In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from create_state_model.h:24, from create_dynamic_intercept_state_model.h:21, from create_dynamic_intercept_state_model.cpp:19: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ create_state_model.h: In member function 'void BOOM::bsts::StateModelFactoryBase::InstallPostStateListElements()': create_state_model.h:89:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 89 | for (int i = 0; i < post_state_list_elements_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create_dynamic_intercept_state_model.cpp: In member function 'BOOM::Ptr BOOM::bsts::DynamicInterceptStateModelFactory::CreateStateModel(BOOM::DynamicInterceptRegressionModel*, SEXP, const std::string&)': create_dynamic_intercept_state_model.cpp:86:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 86 | for (int i = 0; i < class_info.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/DynamicInterceptRegression.hpp:29, from create_dynamic_intercept_state_model.cpp:20: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/Glm/RegressionModel.hpp:33, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateModels/RegressionStateModel.hpp:23, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/DynamicInterceptRegression.hpp:26: /data/gannet/ripley/R/test-dev/Boom/include/Models/Policies/SufstatDataPolicy.hpp: In instantiation of 'void BOOM::SufstatDataPolicy::refresh_suf() [with D = BOOM::UnivData; S = BOOM::GaussianSuf]': /data/gannet/ripley/R/test-dev/Boom/include/Models/Policies/SufstatDataPolicy.hpp:145:5: required from 'void BOOM::SufstatDataPolicy::set_data(const DatasetType&) [with D = BOOM::UnivData; S = BOOM::GaussianSuf; DatasetType = std::vector > >]' /data/gannet/ripley/R/test-dev/Boom/include/Models/Policies/SufstatDataPolicy.hpp:143:8: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/Policies/SufstatDataPolicy.hpp:83:24: warning: comparison of integer expressions of different signedness: 'BOOM::uint' {aka 'long int'} and 'std::vector > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 83 | for (uint i = 0; i < d.size(); ++i) suf_->update(d[i]); | ~~^~~~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c create_shared_state_model.cpp -o create_shared_state_model.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c create_state_model.cpp -o create_state_model.o In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from create_state_model.h:24, from create_shared_state_model.h:21, from create_shared_state_model.cpp:19: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ create_state_model.h: In member function 'void BOOM::bsts::StateModelFactoryBase::InstallPostStateListElements()': create_state_model.h:89:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 89 | for (int i = 0; i < post_state_list_elements_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:26, from create_shared_state_model.h:24: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp: In instantiation of 'bool BOOM::StateSpaceUtils::SharedStateModelManager::has_series_specific_state() const [with PROXY = BOOM::ProxyScalarStateSpaceModel]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:214:54: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp:47:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >, std::allocator > > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 47 | for (int i = 0; i < proxy_models_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp: In instantiation of 'void BOOM::StateSpaceUtils::SharedStateModelManager::observe_time_dimension(int) [with PROXY = BOOM::ProxyScalarStateSpaceModel]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:380:44: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp:86:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >, std::allocator > > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 86 | for (int m = 0; m < proxy_models_.size(); ++m) { | ~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:30: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from create_state_model.h:24, from create_state_model.cpp:17: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ create_state_model.h: In member function 'void BOOM::bsts::StateModelFactoryBase::InstallPostStateListElements()': create_state_model.h:89:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 89 | for (int i = 0; i < post_state_list_elements_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/PosteriorSamplers/DynamicRegressionArPosteriorSampler.hpp:23, from create_state_model.cpp:42: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateModels/DynamicRegressionArStateModel.hpp: In member function 'virtual BOOM::SparseVector BOOM::DynamicRegressionArStateModel::observation_matrix(int) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateModels/DynamicRegressionArStateModel.hpp:121:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 121 | if (t >= expanded_predictors_.size()) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateModels/HierarchicalRegressionHolidayStateModel.hpp:31, from create_state_model.cpp:48: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateModels/RegressionHolidayStateModel.hpp: In member function 'const BOOM::Holiday* BOOM::RegressionHolidayBaseImpl::holiday(int) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateModels/RegressionHolidayStateModel.hpp:69:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 69 | return (t >= 0 && t < holidays_.size()) ? holidays_[t].get() : nullptr; | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateModels/RegressionHolidayStateModel.hpp: In member function 'int BOOM::RegressionHolidayBaseImpl::which_holiday(int) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateModels/RegressionHolidayStateModel.hpp:111:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 111 | return (t >= 0 && t < which_holiday_.size()) ? which_holiday_[t] : -1; | ~~^~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateModels/RegressionHolidayStateModel.hpp: In member function 'int BOOM::RegressionHolidayBaseImpl::which_day(int) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateModels/RegressionHolidayStateModel.hpp:121:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 121 | return (t >= 0 && t < which_day_.size()) ? which_day_[t] : -1; | ~~^~~~~~~~~~~~~~~~~~~ create_state_model.cpp: In member function 'BOOM::Ptr BOOM::bsts::StateModelFactory::CreateStateModel(BOOM::ScalarStateSpaceModelBase*, SEXP, const std::string&)': create_state_model.cpp:191:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 191 | for (int i = 0; i < class_info.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/DynamicInterceptRegression.hpp:29, from create_state_model.cpp:40: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/GammaModel.hpp:29, from /data/gannet/ripley/R/test-dev/Boom/include/Models/ChisqModel.hpp:21, from /data/gannet/ripley/R/test-dev/Boom/include/r_interface/prior_specification.hpp:23, from create_state_model.cpp:25: /data/gannet/ripley/R/test-dev/Boom/include/Models/Policies/SufstatDataPolicy.hpp: In instantiation of 'void BOOM::SufstatDataPolicy::refresh_suf() [with D = BOOM::UnivData; S = BOOM::GaussianSuf]': /data/gannet/ripley/R/test-dev/Boom/include/Models/Policies/SufstatDataPolicy.hpp:145:5: required from 'void BOOM::SufstatDataPolicy::set_data(const DatasetType&) [with D = BOOM::UnivData; S = BOOM::GaussianSuf; DatasetType = std::vector > >]' /data/gannet/ripley/R/test-dev/Boom/include/Models/Policies/SufstatDataPolicy.hpp:143:8: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/Policies/SufstatDataPolicy.hpp:83:24: warning: comparison of integer expressions of different signedness: 'BOOM::uint' {aka 'long int'} and 'std::vector > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 83 | for (uint i = 0; i < d.size(); ++i) suf_->update(d[i]); | ~~^~~~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dirm.cc -o dirm.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dynamic_intercept_model_manager.cc -o dynamic_intercept_model_manager.o In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from model_manager.h:22, from dirm.cc:20: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from model_manager.h:22, from dynamic_intercept_model_manager.h:20, from dynamic_intercept_model_manager.cc:17: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from create_dynamic_intercept_state_model.h:21, from dynamic_intercept_model_manager.cc:18: create_state_model.h: In member function 'void BOOM::bsts::StateModelFactoryBase::InstallPostStateListElements()': create_state_model.h:89:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 89 | for (int i = 0; i < post_state_list_elements_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from model_manager.h:23: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ dynamic_intercept_model_manager.cc: In member function 'virtual void BOOM::bsts::DynamicInterceptModelManager::AddDataFromList(SEXP)': dynamic_intercept_model_manager.cc:213:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 213 | while(observation_number < response.size() && | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c get_date_ranges.cc -o get_date_ranges.o In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from model_manager.h:23: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c mbsts.cc -o mbsts.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c mixed_frequency.cc -o mixed_frequency.o In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from model_manager.h:22, from mbsts.cc:20: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from create_state_model.h:24, from get_date_ranges.cc:23: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ create_state_model.h: In member function 'void BOOM::bsts::StateModelFactoryBase::InstallPostStateListElements()': create_state_model.h:89:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 89 | for (int i = 0; i < post_state_list_elements_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ get_date_ranges.cc: In function 'SEXPREC* analysis_common_r_get_date_ranges_(SEXP, SEXP)': get_date_ranges.cc:62:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 62 | for (int i = 0; i < dates.size(); ++i) { | ~~^~~~~~~~~~~~~~ In file included from mbsts.cc:23: create_state_model.h: In member function 'void BOOM::bsts::StateModelFactoryBase::InstallPostStateListElements()': create_state_model.h:89:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 89 | for (int i = 0; i < post_state_list_elements_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:26, from create_shared_state_model.h:24, from mbsts.cc:24: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp: In instantiation of 'bool BOOM::StateSpaceUtils::SharedStateModelManager::has_series_specific_state() const [with PROXY = BOOM::ProxyScalarStateSpaceModel]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:214:54: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp:47:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >, std::allocator > > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 47 | for (int i = 0; i < proxy_models_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp: In instantiation of 'void BOOM::StateSpaceUtils::SharedStateModelManager::observe_time_dimension(int) [with PROXY = BOOM::ProxyScalarStateSpaceModel]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:380:44: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp:86:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >, std::allocator > > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 86 | for (int m = 0; m < proxy_models_.size(); ++m) { | ~~^~~~~~~~~~~~~~~~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c model_manager.cc -o model_manager.o In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from model_manager.h:23: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c multivariate_gaussian_model_manager.cc -o multivariate_gaussian_model_manager.o In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from create_state_model.h:24, from mixed_frequency.cc:19: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ create_state_model.h: In member function 'void BOOM::bsts::StateModelFactoryBase::InstallPostStateListElements()': create_state_model.h:89:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 89 | for (int i = 0; i < post_state_list_elements_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mixed_frequency.cc: In function 'void {anonymous}::TranscribeResponseData(const BOOM::Ptr&, const BOOM::Ptr&, BOOM::RErrorReporter*)': mixed_frequency.cc:280:19: warning: comparison of integer expressions of different signedness: 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 280 | if (data.size() != imputed_data.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ mixed_frequency.cc: In function 'std::vector, std::allocator > > {anonymous}::ComputeTrainingData(SEXP, SEXP, SEXP, SEXP, SEXP)': mixed_frequency.cc:319:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 319 | && (which_month < target_series.size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from model_manager.h:22, from model_manager.cc:19: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from model_manager.cc:28: create_state_model.h: In member function 'void BOOM::bsts::StateModelFactoryBase::InstallPostStateListElements()': create_state_model.h:89:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 89 | for (int i = 0; i < post_state_list_elements_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from model_manager.cc:36: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateModels/DynamicRegressionArStateModel.hpp: In member function 'virtual BOOM::SparseVector BOOM::DynamicRegressionArStateModel::observation_matrix(int) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateModels/DynamicRegressionArStateModel.hpp:121:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 121 | if (t >= expanded_predictors_.size()) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:26, from multivariate_gaussian_model_manager.h:25, from model_manager.cc:25: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp: In instantiation of 'bool BOOM::StateSpaceUtils::SharedStateModelManager::has_series_specific_state() const [with PROXY = BOOM::ProxyScalarStateSpaceModel]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:214:54: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp:47:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >, std::allocator > > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 47 | for (int i = 0; i < proxy_models_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp: In instantiation of 'void BOOM::StateSpaceUtils::SharedStateModelManager::observe_time_dimension(int) [with PROXY = BOOM::ProxyScalarStateSpaceModel]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:380:44: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp:86:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >, std::allocator > > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 86 | for (int m = 0; m < proxy_models_.size(); ++m) { | ~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from utils.h:24, from multivariate_gaussian_model_manager.cc:19: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from model_manager.h:23: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ In file included from create_shared_state_model.h:21, from multivariate_gaussian_model_manager.cc:21: create_state_model.h: In member function 'void BOOM::bsts::StateModelFactoryBase::InstallPostStateListElements()': create_state_model.h:89:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 89 | for (int i = 0; i < post_state_list_elements_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:26, from multivariate_gaussian_model_manager.h:25, from multivariate_gaussian_model_manager.cc:20: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp: In instantiation of 'bool BOOM::StateSpaceUtils::SharedStateModelManager::has_series_specific_state() const [with PROXY = BOOM::ProxyScalarStateSpaceModel]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:214:54: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp:47:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >, std::allocator > > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 47 | for (int i = 0; i < proxy_models_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp: In instantiation of 'void BOOM::StateSpaceUtils::SharedStateModelManager::observe_time_dimension(int) [with PROXY = BOOM::ProxyScalarStateSpaceModel]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceRegressionModel.hpp:380:44: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/SharedStateModelManager.hpp:86:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >, std::allocator > > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 86 | for (int m = 0; m < proxy_models_.size(); ++m) { | ~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from utils.h:25: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c state_space_gaussian_model_manager.cc -o state_space_gaussian_model_manager.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c state_space_logit_model_manager.cc -o state_space_logit_model_manager.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c state_space_poisson_model_manager.cc -o state_space_poisson_model_manager.o In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from model_manager.h:22, from state_space_gaussian_model_manager.h:20, from state_space_gaussian_model_manager.cc:17: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ state_space_gaussian_model_manager.cc: In member function 'void BOOM::bsts::StateSpaceModelManager::AddData(const BOOM::Vector&, const std::vector&)': state_space_gaussian_model_manager.cc:142:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 142 | for (int i = 0; i < response.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ state_space_gaussian_model_manager.cc: In member function 'virtual BOOM::bsts::HoldoutErrorSampler BOOM::bsts::StateSpaceModelManager::CreateHoldoutSampler(SEXP, int, bool, BOOM::Matrix*)': state_space_gaussian_model_manager.cc:177:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 177 | for (int i = cutpoint + 1; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from model_manager.h:22, from state_space_logit_model_manager.h:20, from state_space_logit_model_manager.cc:17: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from model_manager.h:23: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from model_manager.h:22, from state_space_poisson_model_manager.h:20, from state_space_poisson_model_manager.cc:17: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c state_space_regression_model_manager.cc -o state_space_regression_model_manager.o In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.hpp:23, from /data/gannet/ripley/R/test-dev/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.hpp:23, from state_space_logit_model_manager.cc:20: /data/gannet/ripley/R/test-dev/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function 'int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 218 | for (int i = 0; i < workers_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ state_space_logit_model_manager.cc: In member function 'virtual BOOM::StateSpaceLogitModel* BOOM::bsts::StateSpaceLogitModelManager::CreateBareModel(SEXP, SEXP, SEXP, BOOM::RListIoManager*)': state_space_logit_model_manager.cc:66:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 66 | for (int i = 0; i < successes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ state_space_logit_model_manager.cc: In member function 'void BOOM::bsts::StateSpaceLogitModelManager::AddData(const BOOM::Vector&, const BOOM::Vector&, const BOOM::Matrix&, const std::vector&)': state_space_logit_model_manager.cc:202:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 202 | for (int i = 0; i < successes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/Glm/PosteriorSamplers/PoissonRegressionAuxMixSampler.hpp:30, from /data/gannet/ripley/R/test-dev/Boom/include/Models/Glm/PosteriorSamplers/PoissonRegressionSpikeSlabSampler.hpp:24, from state_space_poisson_model_manager.cc:25: /data/gannet/ripley/R/test-dev/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function 'int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 218 | for (int i = 0; i < workers_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ state_space_poisson_model_manager.cc: In member function 'virtual BOOM::StateSpacePoissonModel* BOOM::bsts::StateSpacePoissonModelManager::CreateBareModel(SEXP, SEXP, SEXP, BOOM::RListIoManager*)': state_space_poisson_model_manager.cc:85:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 85 | for (int i = 0; i < counts.size(); ++i) { | ~~^~~~~~~~~~~~~~~ state_space_poisson_model_manager.cc: In member function 'void BOOM::bsts::StateSpacePoissonModelManager::AddData(const BOOM::Vector&, const BOOM::Vector&, const BOOM::Matrix&, const std::vector&)': state_space_poisson_model_manager.cc:210:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 210 | for (int i = 0; i < counts.size(); ++i) { | ~~^~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from model_manager.h:23: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from model_manager.h:23: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from model_manager.h:22, from state_space_gaussian_model_manager.h:20, from state_space_regression_model_manager.h:20, from state_space_regression_model_manager.cc:17: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c state_space_student_model_manager.cc -o state_space_student_model_manager.o In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ state_space_regression_model_manager.cc: In member function 'virtual BOOM::StateSpaceRegressionModel* BOOM::bsts::StateSpaceRegressionModelManager::CreateBareModel(SEXP, SEXP, SEXP, BOOM::RListIoManager*)': state_space_regression_model_manager.cc:75:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 75 | for (int i = 0; i < response.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ state_space_regression_model_manager.cc: In member function 'void BOOM::bsts::StateSpaceRegressionModelManager::AddData(const BOOM::Vector&, const BOOM::Matrix&, const std::vector&)': state_space_regression_model_manager.cc:233:28: warning: comparison of integer expressions of different signedness: 'BOOM::uint' {aka 'long int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 233 | if (nrow(predictors) != response.size() | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ state_space_regression_model_manager.cc:244:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 244 | for (int i = 0; i < response.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ state_space_regression_model_manager.cc: In member function 'virtual BOOM::bsts::HoldoutErrorSampler BOOM::bsts::StateSpaceRegressionModelManager::CreateHoldoutSampler(SEXP, int, bool, BOOM::Matrix*)': state_space_regression_model_manager.cc:296:36: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 296 | for (int i = cutpoint + 1; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ state_space_regression_model_manager.cc:303:36: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 303 | for (int i = cutpoint + 1; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from model_manager.h:23: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from model_manager.h:22, from state_space_student_model_manager.h:20, from state_space_student_model_manager.cc:17: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ state_space_student_model_manager.cc: In member function 'virtual BOOM::StateSpaceStudentRegressionModel* BOOM::bsts::StateSpaceStudentModelManager::CreateBareModel(SEXP, SEXP, SEXP, BOOM::RListIoManager*)': state_space_student_model_manager.cc:73:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 73 | for (int i = 0; i < response.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ state_space_student_model_manager.cc: In member function 'virtual BOOM::bsts::HoldoutErrorSampler BOOM::bsts::StateSpaceStudentModelManager::CreateHoldoutSampler(SEXP, int, bool, BOOM::Matrix*)': state_space_student_model_manager.cc:183:36: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 183 | for (int i = cutpoint + 1; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ state_space_student_model_manager.cc:190:36: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 190 | for (int i = cutpoint + 1; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from model_manager.h:23: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c timestamp_info.cc -o timestamp_info.o timestamp_info.cc: In member function 'void BOOM::bsts::TimestampInfo::UnpackForecastTimestamps(SEXP)': timestamp_info.cc:54:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 54 | for (int i = 1; i < forecast_timestamps_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I`/data/gannet/ripley/R/R-devel/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/data/gannet/ripley/R/test-dev/Boom/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utils.cc -o utils.o In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:23, from utils.h:24, from utils.cc:17: /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp: In member function 'int BOOM::ThreadWorkerPool::number_of_joinable_threads() const': /data/gannet/ripley/R/test-dev/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/StateSpaceModelBase.hpp:33: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::ZeroPaddedIdentityMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1269:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'BOOM::uint' {aka 'long int'} [-Wsign-compare] 1269 | for (size_t i = ncol_; i < lhs.size(); ++i) { | ~~^~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1499:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1499 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_and_add(BOOM::VectorView, const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1508:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1508 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::multiply_inplace(BOOM::VectorView) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1517:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1517 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1525:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1525 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual BOOM::SpdMatrix BOOM::UpperLeftDiagonalMatrix::inner(const BOOM::ConstVectorView&) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1536:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1536 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'virtual void BOOM::UpperLeftDiagonalMatrix::add_to_block(BOOM::SubMatrix) const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1546:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1546 | for (int i = 0; i < diagonal_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'void BOOM::UpperLeftDiagonalMatrix::check_diagonal_dimension(int, const std::vector >&)': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:1558:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1558 | if (dim < diagonal.size()) { | ~~~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp: In member function 'const BOOM::Vector& BOOM::DenseSparseRankOneMatrixBlock::dense_right() const': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/SparseMatrix.hpp:2052:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2052 | if (dense_right_.size() != right_.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ utils.cc: In function 'void BOOM::bsts::DropUnforcedCoefficients(const BOOM::Ptr&, const BOOM::Vector&)': utils.cc:28:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 28 | for (int i = 0; i < prior_inclusion_probs.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils.cc: In function 'std::vector BOOM::bsts::IsObserved(SEXP)': utils.cc:58:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 58 | for (int i = 0; i < n; ++i) { | ~~^~~ In file included from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/ConditionalIidKalmanFilter.hpp:22, from /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Multivariate/MultivariateStateSpaceModelBase.hpp:28, from utils.h:25: /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp: In instantiation of 'void BOOM::MultivariateKalmanFilter::ensure_size(int) [with MARGINAL = BOOM::Kalman::ConditionallyIndependentMarginalDistribution]': /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:227:10: required from here /data/gannet/ripley/R/test-dev/Boom/include/Models/StateSpace/Filters/MultivariateKalmanFilterBase.hpp:228:27: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 228 | while(nodes_.size() <= time) { | ~~~~~~~~~~~~~~^~~~~~~~ g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o bsts.so aggregate_time_series.o bsts.o bsts_init.o create_dynamic_intercept_state_model.o create_shared_state_model.o create_state_model.o dirm.o dynamic_intercept_model_manager.o get_date_ranges.o mbsts.o mixed_frequency.o model_manager.o multivariate_gaussian_model_manager.o state_space_gaussian_model_manager.o state_space_logit_model_manager.o state_space_poisson_model_manager.o state_space_regression_model_manager.o state_space_student_model_manager.o timestamp_info.o utils.o /data/gannet/ripley/R/test-dev/Boom/lib/libboom.a make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bsts/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bsts/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bsts/src' installing to /data/gannet/ripley/R/packages/tests-devel/bsts.Rcheck/00LOCK-bsts/00new/bsts/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bsts)