* installing *source* package ‘bioPN’ ...
** package ‘bioPN’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bioPN/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c GibsonBruck.c -o GibsonBruck.o
GibsonBruck.c: In function 'GibsonBruck':
GibsonBruck.c:83:31: warning: ISO C forbids assignment between function pointer and 'void *' [-Wpedantic]
83 | pCFunction[iTransition] = (void *) R_ExternalPtrAddr(sexpTmp);
| ^
GibsonBruck.c:219:11: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
219 | dT = ((double(*)(double, double *)) pCManage_time)(-1, pdCrntMarking);
| ^
GibsonBruck.c:348:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
348 | dEnd = ((double(*)(double, double *)) pCManage_time)(dTarget, pdCrntMarking);
| ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c GillespieDirectCR.c -o GillespieDirectCR.o
GillespieDirectCR.c: In function 'GillespieDirectCR':
GillespieDirectCR.c:83:31: warning: ISO C forbids assignment between function pointer and 'void *' [-Wpedantic]
83 | pCFunction[iTransition] = (void *) R_ExternalPtrAddr(sexpTmp);
| ^
GillespieDirectCR.c:187:11: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
187 | dT = ((double(*)(double, double *)) pCManage_time)(-1, pdCrntMarking);
| ^
GillespieDirectCR.c:358:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
358 | dEnd = ((double(*)(double, double *)) pCManage_time)(dTarget, pdCrntMarking);
| ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c GillespieDirectGB.c -o GillespieDirectGB.o
GillespieDirectGB.c: In function 'GillespieDirectGB':
GillespieDirectGB.c:110:31: warning: ISO C forbids assignment between function pointer and 'void *' [-Wpedantic]
110 | pCFunction[iTransition] = (void *) R_ExternalPtrAddr(sexpTmp);
| ^
GillespieDirectGB.c:246:11: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
246 | dT = ((double(*)(double, double *)) pCManage_time)(-1, pdCrntMarking);
| ^
GillespieDirectGB.c:338:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
338 | dEnd = ((double(*)(double, double *)) pCManage_time)(dTarget, pdCrntMarking);
| ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c GillespieOptimDirect.c -o GillespieOptimDirect.o
GillespieOptimDirect.c: In function 'GillespieOptimDirect':
GillespieOptimDirect.c:76:31: warning: ISO C forbids assignment between function pointer and 'void *' [-Wpedantic]
76 | pCFunction[iTransition] = (void *) R_ExternalPtrAddr(sexpTmp);
| ^
GillespieOptimDirect.c:182:11: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
182 | dT = ((double(*)(double, double *)) pCManage_time)(-1, pdCrntMarking);
| ^
GillespieOptimDirect.c:276:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
276 | dEnd = ((double(*)(double, double *)) pCManage_time)(dTarget, pdCrntMarking);
| ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c HaseltineRawlings.c -o HaseltineRawlings.o
HaseltineRawlings.c: In function 'HaseltineRawlings':
HaseltineRawlings.c:126:31: warning: ISO C forbids assignment between function pointer and 'void *' [-Wpedantic]
126 | pCFunction[iTransition] = (void *) R_ExternalPtrAddr(sexpTmp);
| ^
HaseltineRawlings.c:294:11: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
294 | dT = ((double(*)(double, double *)) pCManage_time)(-1, pdCrntMarking);
| ^
HaseltineRawlings.c:409:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
409 | dEnd = ((double(*)(double, double *)) pCManage_time)(dTarget, pdCrntMarking);
| ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c PartitionedLeaping.c -o PartitionedLeaping.o
PartitionedLeaping.c: In function 'PartitionedLeaping':
PartitionedLeaping.c:81:31: warning: ISO C forbids assignment between function pointer and 'void *' [-Wpedantic]
81 | pCFunction[iTransition] = (void *) R_ExternalPtrAddr(sexpTmp);
| ^
PartitionedLeaping.c:328:11: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
328 | dT = ((double(*)(double, double *)) pCManage_time)(-1, pdCrntMarking);
| ^
PartitionedLeaping.c:442:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
442 | dEnd = ((double(*)(double, double *)) pCManage_time)(dTarget, pdCrntMarking);
| ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c helper.c -o helper.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mean_sd.c -o mean_sd.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c prdgrm.c -o prdgrm.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c quicksort.c -o quicksort.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o bioPN.so GibsonBruck.o GillespieDirectCR.o GillespieDirectGB.o GillespieOptimDirect.o HaseltineRawlings.o PartitionedLeaping.o helper.o mean_sd.o prdgrm.o quicksort.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bioPN/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bioPN/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bioPN/src'
installing to /data/gannet/ripley/R/packages/tests-devel/bioPN.Rcheck/00LOCK-bioPN/00new/bioPN/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bioPN)