* installing *source* package ‘bfp’ ...
** package ‘bfp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bfp/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D R_NO_REMAP -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c hyp2f1.c -o hyp2f1.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D R_NO_REMAP -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mtherr.c -o mtherr.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D R_NO_REMAP -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -Inewmat -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bayesMfp.cpp -o bayesMfp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D R_NO_REMAP -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -Inewmat -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dataStructure.cpp -o dataStructure.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D R_NO_REMAP -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -Inewmat -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c hyperg.cpp -o hyperg.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D R_NO_REMAP -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -Inewmat -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c combinatorics.cpp -o combinatorics.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D R_NO_REMAP -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -Inewmat -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RnewMat.cpp -o RnewMat.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D R_NO_REMAP -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -Inewmat -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c conversions.cpp -o conversions.o
rm: cannot remove '*.a': No such file or directory
make[1]: [Makevars:31: subclean] Error 1 (ignored)
(cd newmat && MkInclude="/data/gannet/ripley/R/R-devel/etc/Makeconf" make clean) || exit 1;
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bfp/src/newmat'
rm -f -r .libs _libs libnewmat.a
rm -f newmat1.o newmat2.o newmat3.o newmat4.o newmat5.o newmat6.o newmat7.o newmat8.o newmatex.o bandmat.o submat.o myexcept.o cholesky.o evalue.o fft.o hholder.o jacobi.o newfft.o sort.o svd.o nm_misc.o newmatrm.o newmat9.o
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bfp/src/newmat'
(cd newmat && CFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes " CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection " MAKE="make -f \"/data/gannet/ripley/R/R-devel/etc/Makeconf\" -f Makefile" make -f "/data/gannet/ripley/R/R-devel/etc/Makeconf" -f Makefile library) || exit 1;
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bfp/src/newmat'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c newmat1.cpp -o newmat1.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c newmat2.cpp -o newmat2.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c newmat3.cpp -o newmat3.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c newmat4.cpp -o newmat4.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:30,
from rcppExport.h:11,
from dataStructure.h:11,
from RnewMat.cpp:2:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/r/headers.h:26: warning: "R_NO_REMAP" redefined
26 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:30,
from rcppExport.h:11,
from dataStructure.h:11,
from bayesMfp.cpp:4:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/r/headers.h:26: warning: "R_NO_REMAP" redefined
26 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:30,
from rcppExport.h:11,
from dataStructure.h:11,
from dataStructure.cpp:1:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/r/headers.h:26: warning: "R_NO_REMAP" redefined
26 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
newmat3.cpp: In member function 'virtual void SymmetricBandMatrix::GetRow(MatrixRowCol&)':
newmat3.cpp:670:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
670 | if (s>0) w -= s; mrc.storage = w; int w2 = w-w1;
| ^~
newmat3.cpp:670:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
670 | if (s>0) w -= s; mrc.storage = w; int w2 = w-w1;
| ^~~
newmat3.cpp: In member function 'virtual void SymmetricBandMatrix::GetCol(MatrixRowCol&)':
newmat3.cpp:711:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
711 | if (s>0) w -= s; mrc.storage = w; int w2 = w-w1;
| ^~
newmat3.cpp:711:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
711 | if (s>0) w -= s; mrc.storage = w; int w2 = w-w1;
| ^~~
newmat3.cpp: In member function 'virtual void SymmetricBandMatrix::GetCol(MatrixColX&)':
newmat3.cpp:761:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
761 | if (s>0) w -= s; mrc.storage = w; int w2 = w-w1;
| ^~
newmat3.cpp:761:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
761 | if (s>0) w -= s; mrc.storage = w; int w2 = w-w1;
| ^~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c newmat5.cpp -o newmat5.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c newmat6.cpp -o newmat6.o
newmat2.cpp: In member function 'void MatrixRowCol::Add(const MatrixRowCol&)':
newmat2.cpp:41:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
41 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp:41:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
41 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp: In member function 'void MatrixRowCol::AddScaled(const MatrixRowCol&, Real)':
newmat2.cpp:52:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
52 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp:52:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
52 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp: In member function 'void MatrixRowCol::Sub(const MatrixRowCol&)':
newmat2.cpp:63:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
63 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp:63:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
63 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp: In member function 'void MatrixRowCol::Inject(const MatrixRowCol&)':
newmat2.cpp:74:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
74 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp:74:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
74 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp: In function 'Real DotProd(const MatrixRowCol&, const MatrixRowCol&)':
newmat2.cpp:85:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
85 | if (f < f2) f = f2; if (l > l2) l = l2; l -= f;
| ^~
newmat2.cpp:85:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
85 | if (f < f2) f = f2; if (l > l2) l = l2; l -= f;
| ^~
newmat2.cpp: In member function 'void MatrixRowCol::Add(const MatrixRowCol&, const MatrixRowCol&)':
newmat2.cpp:99:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
99 | if (f1<f) f1=f; if (l1>l) l1=l;
| ^~
newmat2.cpp:99:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
99 | if (f1<f) f1=f; if (l1>l) l1=l;
| ^~
newmat2.cpp:101:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
101 | if (f2<f) f2=f; if (l2>l) l2=l;
| ^~
newmat2.cpp:101:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
101 | if (f2<f) f2=f; if (l2>l) l2=l;
| ^~
newmat2.cpp: In member function 'void MatrixRowCol::Sub(const MatrixRowCol&, const MatrixRowCol&)':
newmat2.cpp:171:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
171 | if (f1<f) f1=f; if (l1>l) l1=l;
| ^~
newmat2.cpp:171:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
171 | if (f1<f) f1=f; if (l1>l) l1=l;
| ^~
newmat2.cpp:173:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
173 | if (f2<f) f2=f; if (l2>l) l2=l;
| ^~
newmat2.cpp:173:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
173 | if (f2<f) f2=f; if (l2>l) l2=l;
| ^~
newmat2.cpp: In member function 'void MatrixRowCol::Multiply(const MatrixRowCol&, const MatrixRowCol&)':
newmat2.cpp:335:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
335 | if (f1<f) f1=f; if (l1>l) l1=l;
| ^~
newmat2.cpp:335:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
335 | if (f1<f) f1=f; if (l1>l) l1=l;
| ^~
newmat2.cpp:337:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
337 | if (f2<f) f2=f; if (l2>l) l2=l;
| ^~
newmat2.cpp:337:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
337 | if (f2<f) f2=f; if (l2>l) l2=l;
| ^~
newmat2.cpp:339:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
339 | if (f1<f2) f1 = f2; if (l1>l2) l1 = l2;
| ^~
newmat2.cpp:339:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
339 | if (f1<f2) f1 = f2; if (l1>l2) l1 = l2;
| ^~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c newmat7.cpp -o newmat7.o
newmat7.cpp: In member function 'virtual GeneralMatrix* AddedMatrix::Evaluate(MatrixType)':
newmat7.cpp:554:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
554 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:554:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
554 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:558:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
558 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:558:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
558 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp: In member function 'virtual GeneralMatrix* SubtractedMatrix::Evaluate(MatrixType)':
newmat7.cpp:618:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
618 | if (!c1) gm1->tDelete(); gmx = gm2;
| ^~
newmat7.cpp:618:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
618 | if (!c1) gm1->tDelete(); gmx = gm2;
| ^~~
newmat7.cpp:627:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
627 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:627:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
627 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:631:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
631 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:631:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
631 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp: In member function 'virtual GeneralMatrix* SPMatrix::Evaluate(MatrixType)':
newmat7.cpp:697:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
697 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:697:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
697 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:701:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
701 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:701:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
701 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp: In function 'bool RealEqual(Real*, Real*, int)':
newmat7.cpp:781:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
781 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp:781:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
781 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp:782:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
782 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp:782:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
782 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp: In function 'bool intEqual(int*, int*, int)':
newmat7.cpp:793:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
793 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp:793:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
793 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp:794:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
794 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp:794:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
794 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp: In member function 'bool GeneralMatrix::is_zero() const':
newmat7.cpp:871:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
871 | if (*s++) return false; if (*s++) return false;
| ^~
newmat7.cpp:871:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
871 | if (*s++) return false; if (*s++) return false;
| ^~
newmat7.cpp:872:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
872 | if (*s++) return false; if (*s++) return false;
| ^~
newmat7.cpp:872:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
872 | if (*s++) return false; if (*s++) return false;
| ^~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c newmat8.cpp -o newmat8.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c newmatex.cpp -o newmatex.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bandmat.cpp -o bandmat.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c submat.cpp -o submat.o
newmat8.cpp: In member function 'virtual LogAndSign CroutMatrix::log_determinant() const':
newmat8.cpp:715:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
715 | if (!d) sum.ChangeSign(); return sum;
| ^~
newmat8.cpp:715:30: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
715 | if (!d) sum.ChangeSign(); return sum;
| ^~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c myexcept.cpp -o myexcept.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cholesky.cpp -o cholesky.o
bandmat.cpp: In member function 'virtual LogAndSign BandLUMatrix::log_determinant() const':
bandmat.cpp:362:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
362 | if (!d) sum.ChangeSign(); return sum;
| ^~
bandmat.cpp:362:30: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
362 | if (!d) sum.ChangeSign(); return sum;
| ^~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c evalue.cpp -o evalue.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fft.cpp -o fft.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c hholder.cpp -o hholder.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c jacobi.cpp -o jacobi.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c newfft.cpp -o newfft.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sort.cpp -o sort.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svd.cpp -o svd.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nm_misc.cpp -o nm_misc.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c newmatrm.cpp -o newmatrm.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c newmat9.cpp -o newmat9.o
gcc-ar -rucs libnewmat.a newmat1.o newmat2.o newmat3.o newmat4.o newmat5.o newmat6.o newmat7.o newmat8.o newmatex.o bandmat.o submat.o myexcept.o cholesky.o evalue.o fft.o hholder.o jacobi.o newfft.o sort.o svd.o nm_misc.o newmatrm.o newmat9.o
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bfp/src/newmat'
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o bfp.so hyp2f1.o mtherr.o bayesMfp.o dataStructure.o hyperg.o combinatorics.o RnewMat.o conversions.o -Lnewmat -lnewmat
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bfp/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bfp/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bfp/src'
installing to /data/gannet/ripley/R/packages/tests-devel/bfp.Rcheck/00LOCK-bfp/00new/bfp/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bfp)