* installing *source* package ‘bbl’ ...
** package ‘bbl’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bbl/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c bfgs.cpp -o bfgs.o
bfgs.cpp: In function 'void f12(int, const std::vector<std::vector<short int> >&, const std::vector<int>&, std::vector<double>&, std::vector<std::vector<double> >&, const std::vector<short int>&, bool, double)':
bfgs.cpp:367:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  367 |         for(unsigned int l1=0; l1<Lj; l1++){
      |                                ~~^~~
bfgs.cpp:375:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  375 |         for(unsigned int l1=0; l1<Lj; l1++)
      |                                ~~^~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c invc.cpp -o invc.o
invc.cpp: In function 'void invC(const std::vector<std::vector<short int> >&, const std::vector<int>&, const std::vector<short int>&, double&, double&, std::vector<std::vector<double> >&, std::vector<std::vector<std::vector<double> > >&, double, double)':
invc.cpp:61:27: warning: 'A' may be used uninitialized [-Wmaybe-uninitialized]
   61 |             gsl_matrix_set(A, idx, jdx++, x);
      |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
invc.cpp:30:15: note: 'A' was declared here
   30 |   gsl_matrix *A;
      |               ^
invc.cpp:69:25: warning: 'Ai' may be used uninitialized [-Wmaybe-uninitialized]
   69 |     gsl_linalg_LU_invert(A,perm,Ai);
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
invc.cpp:31:15: note: 'Ai' was declared here
   31 |   gsl_matrix *Ai;
      |               ^~
invc.cpp:68:25: warning: 'perm' may be used uninitialized [-Wmaybe-uninitialized]
   68 |     gsl_linalg_LU_decomp(A,perm,&s);
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
invc.cpp:32:20: note: 'perm' was declared here
   32 |   gsl_permutation *perm;
      |                    ^~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c mfwrapper.cpp -o mfwrapper.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c pseudo_mle.cpp -o pseudo_mle.o
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o bbl.so RcppExports.o bfgs.o invc.o mfwrapper.o pseudo_mle.o -lgsl -lgslcblas
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bbl/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bbl/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bbl/src'
installing to /data/gannet/ripley/R/packages/tests-devel/bbl.Rcheck/00LOCK-bbl/00new/bbl/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bbl)