* installing *source* package ‘TFMPvalue’ ...
** package ‘TFMPvalue’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/TFMPvalue/src'
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ArgumentException.cpp -o ArgumentException.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c FileException.cpp -o FileException.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Matrix.cpp -o Matrix.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ParseException.cpp -o ParseException.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c TFMMain.cpp -o TFMMain.o
TFMMain.cpp: In function 'SEXPREC* pv2sc(SEXP, SEXP, SEXP, SEXP)':
TFMMain.cpp:159:8: warning: unused variable 'sortColumns' [-Wunused-variable]
  159 |   bool sortColumns = false;
      |        ^~~~~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c TFMPvalue_init.c -o TFMPvalue_init.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c TFMpvalue.cpp -o TFMpvalue.o
TFMpvalue.cpp: In function 'void testLazyDistrib(Matrix, double, double)':
TFMpvalue.cpp:119:13: warning: unused variable 'totalSize' [-Wunused-variable]
  119 |   qlonglong totalSize = 0;
      |             ^~~~~~~~~
TFMpvalue.cpp:120:13: warning: unused variable 'totalOp' [-Wunused-variable]
  120 |   qlonglong totalOp = 0;
      |             ^~~~~~~
TFMpvalue.cpp: In function 'void testFastPvalue(Matrix, double, double)':
TFMpvalue.cpp:185:13: warning: unused variable 'totalSize' [-Wunused-variable]
  185 |   qlonglong totalSize = 0;
      |             ^~~~~~~~~
TFMpvalue.cpp:186:13: warning: unused variable 'totalOp' [-Wunused-variable]
  186 |   qlonglong totalOp = 0;
      |             ^~~~~~~
TFMpvalue.cpp:190:10: warning: unused variable 'pvalue' [-Wunused-variable]
  190 |   double pvalue = m.fastPvalue(&m,(qlonglong)(score * m.granularity + m.offset));
      |          ^~~~~~
g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o TFMPvalue.so ArgumentException.o FileException.o Matrix.o ParseException.o TFMMain.o TFMPvalue_init.o TFMpvalue.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/TFMPvalue/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/TFMPvalue/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/TFMPvalue/src'
installing to /data/gannet/ripley/R/packages/tests-devel/TFMPvalue.Rcheck/00LOCK-TFMPvalue/00new/TFMPvalue/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TFMPvalue)