* installing *source* package ‘SemiCompRisks’ ...
** package ‘SemiCompRisks’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/SemiCompRisks/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BAFT_DPscr.c -o BAFT_DPscr.o
BAFT_DPscr.c: In function 'BAFT_DPscrmcmc':
BAFT_DPscr.c:120:22: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
120 | gsl_matrix *X1 = gsl_matrix_calloc(*n, (nP1));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr.c:111:9: note: 'nP1' was declared here
111 | int nP1, nP2, nP3;
| ^~~
BAFT_DPscr.c:121:22: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
121 | gsl_matrix *X2 = gsl_matrix_calloc(*n, (nP2));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr.c:111:14: note: 'nP2' was declared here
111 | int nP1, nP2, nP3;
| ^~~
BAFT_DPscr.c:122:22: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
122 | gsl_matrix *X3 = gsl_matrix_calloc(*n, (nP3));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr.c:111:19: note: 'nP3' was declared here
111 | int nP1, nP2, nP3;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BAFT_DPscr_Updates.c -o BAFT_DPscr_Updates.o
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_mu_zeta3':
BAFT_DPscr_Updates.c:1574:42: warning: variable 'LL_negInf' set but not used [-Wunused-but-set-variable]
1574 | int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
| ^~~~~~~~~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_beta1':
BAFT_DPscr_Updates.c:78:22: warning: 'ii' may be used uninitialized [-Wmaybe-uninitialized]
78 | mean = eta + gsl_vector_get(mu1_all, ii);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:43:22: note: 'ii' was declared here
43 | int i, j, uu, k, ii;
| ^~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_beta2':
BAFT_DPscr_Updates.c:178:22: warning: 'ii' may be used uninitialized [-Wmaybe-uninitialized]
178 | mean = eta + gsl_vector_get(mu2_all, ii);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:143:22: note: 'ii' was declared here
143 | int i, j, uu, k, ii;
| ^~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_beta3':
BAFT_DPscr_Updates.c:286:30: warning: 'ii' may be used uninitialized [-Wmaybe-uninitialized]
286 | mean = eta + gsl_vector_get(mu3_all, ii);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:244:22: note: 'ii' was declared here
244 | int i, j, uu, k, ii;
| ^~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_mu_zeta1':
BAFT_DPscr_Updates.c:778:12: warning: 'wh_ri' may be used uninitialized [-Wmaybe-uninitialized]
778 | if(gsl_vector_get(r1Uniq_count, wh_ri) > 1) /* not singleton */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:741:31: note: 'wh_ri' was declared here
741 | int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
| ^~~~~
BAFT_DPscr_Updates.c:918:29: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized]
918 | val /= pnorm(gsl_vector_get(c0, i), mean, sd, 0, 0);
| ^~
BAFT_DPscr_Updates.c:742:28: note: 'val' was declared here
742 | double b_mc, sum_prob, val, mu, zeta, eta, cond;
| ^~~
BAFT_DPscr_Updates.c:1028:26: warning: 'temp' may be used uninitialized [-Wmaybe-uninitialized]
1028 | temp -= pnorm(gsl_vector_get(c0, i), mean, sd, 0, 1);
| ^~
BAFT_DPscr_Updates.c:990:50: note: 'temp' was declared here
990 | double mu_prop, zeta_prop, mu_ini, zeta_ini, temp, temp_prop;
| ^~~~
BAFT_DPscr_Updates.c:1029:31: warning: 'temp_prop' may be used uninitialized [-Wmaybe-uninitialized]
1029 | temp_prop -= pnorm(gsl_vector_get(c0, i), mean_prop, sd, 0, 1);
| ^~
BAFT_DPscr_Updates.c:990:56: note: 'temp_prop' was declared here
990 | double mu_prop, zeta_prop, mu_ini, zeta_ini, temp, temp_prop;
| ^~~~~~~~~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_mu_zeta2':
BAFT_DPscr_Updates.c:1196:12: warning: 'wh_ri' may be used uninitialized [-Wmaybe-uninitialized]
1196 | if(gsl_vector_get(r2Uniq_count, wh_ri) > 1) /* not singleton */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1159:31: note: 'wh_ri' was declared here
1159 | int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
| ^~~~~
BAFT_DPscr_Updates.c:1338:29: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized]
1338 | val /= pnorm(gsl_vector_get(c0, i), mean, sd, 0, 0);
| ^~
BAFT_DPscr_Updates.c:1160:28: note: 'val' was declared here
1160 | double b_mc, sum_prob, val, mu, zeta, eta, cond;
| ^~~
BAFT_DPscr_Updates.c:1448:26: warning: 'temp' may be used uninitialized [-Wmaybe-uninitialized]
1448 | temp -= pnorm(gsl_vector_get(c0, i), mean, sd, 0, 1);
| ^~
BAFT_DPscr_Updates.c:1410:50: note: 'temp' was declared here
1410 | double mu_prop, zeta_prop, mu_ini, zeta_ini, temp, temp_prop;
| ^~~~
BAFT_DPscr_Updates.c:1449:31: warning: 'temp_prop' may be used uninitialized [-Wmaybe-uninitialized]
1449 | temp_prop -= pnorm(gsl_vector_get(c0, i), mean_prop, sd, 0, 1);
| ^~
BAFT_DPscr_Updates.c:1410:56: note: 'temp_prop' was declared here
1410 | double mu_prop, zeta_prop, mu_ini, zeta_ini, temp, temp_prop;
| ^~~~~~~~~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_mu_zeta3':
BAFT_DPscr_Updates.c:1618:16: warning: 'wh_ri' may be used uninitialized [-Wmaybe-uninitialized]
1618 | if(gsl_vector_get(r3Uniq_count, wh_ri) > 1) /* not singleton */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1574:31: note: 'wh_ri' was declared here
1574 | int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
| ^~~~~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_gamma':
BAFT_DPscr_Updates.c:2001:24: warning: 'ii1' may be used uninitialized [-Wmaybe-uninitialized]
2001 | mean1 = eta1 + gsl_vector_get(mu1_all, ii1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1956:19: note: 'ii1' was declared here
1956 | int i, uu, k, ii1, ii2, ii3;
| ^~~
BAFT_DPscr_Updates.c:2005:24: warning: 'ii2' may be used uninitialized [-Wmaybe-uninitialized]
2005 | mean2 = eta2 + gsl_vector_get(mu2_all, ii2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1956:24: note: 'ii2' was declared here
1956 | int i, uu, k, ii1, ii2, ii3;
| ^~~
BAFT_DPscr_Updates.c:2020:32: warning: 'ii3' may be used uninitialized [-Wmaybe-uninitialized]
2020 | mean3 = eta3 + gsl_vector_get(mu3_all, ii3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1956:29: note: 'ii3' was declared here
1956 | int i, uu, k, ii1, ii2, ii3;
| ^~~
In file included from BAFT_DPscr_Updates.c:16:
/data/gannet/ripley/R/R-devel/include/Rmath.h:230:25: warning: 'mean3' may be used uninitialized [-Wmaybe-uninitialized]
230 | #define dnorm4 Rf_dnorm4
/data/gannet/ripley/R/R-devel/include/Rmath.h:348:15: note: in expansion of macro 'dnorm4'
348 | #define dnorm dnorm4
| ^~~~~~
BAFT_DPscr_Updates.c:2040:26: note: in expansion of macro 'dnorm'
2040 | loglh += dnorm(yStar, mean3, sd3, 1);
| ^~~~~
BAFT_DPscr_Updates.c:1962:12: note: 'mean3' was declared here
1962 | double mean3, mean3_prop, sd3;
| ^~~~~
/data/gannet/ripley/R/R-devel/include/Rmath.h:230:25: warning: 'mean3_prop' may be used uninitialized [-Wmaybe-uninitialized]
230 | #define dnorm4 Rf_dnorm4
/data/gannet/ripley/R/R-devel/include/Rmath.h:348:15: note: in expansion of macro 'dnorm4'
348 | #define dnorm dnorm4
| ^~~~~~
BAFT_DPscr_Updates.c:2041:31: note: in expansion of macro 'dnorm'
2041 | loglh_prop += dnorm(yStar, mean3_prop, sd3, 1);
| ^~~~~
BAFT_DPscr_Updates.c:1962:19: note: 'mean3_prop' was declared here
1962 | double mean3, mean3_prop, sd3;
| ^~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rmath.h:230:25: warning: 'sd3' may be used uninitialized [-Wmaybe-uninitialized]
230 | #define dnorm4 Rf_dnorm4
/data/gannet/ripley/R/R-devel/include/Rmath.h:348:15: note: in expansion of macro 'dnorm4'
348 | #define dnorm dnorm4
| ^~~~~~
BAFT_DPscr_Updates.c:2041:31: note: in expansion of macro 'dnorm'
2041 | loglh_prop += dnorm(yStar, mean3_prop, sd3, 1);
| ^~~~~
BAFT_DPscr_Updates.c:1962:31: note: 'sd3' was declared here
1962 | double mean3, mean3_prop, sd3;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BAFT_DPsurv.c -o BAFT_DPsurv.o
BAFT_DPsurv.c: In function 'BAFT_DPunimcmc':
BAFT_DPsurv.c:74:21: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
74 | gsl_matrix *X = gsl_matrix_calloc(*n, (nP));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPsurv.c:69:9: note: 'nP' was declared here
69 | int nP;
| ^~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BAFT_DPsurv_Updates.c -o BAFT_DPsurv_Updates.o
BAFT_DPsurv_Updates.c: In function 'BAFT_DPsurv_update_mu_zeta':
BAFT_DPsurv_Updates.c:88:12: warning: 'wh_ri' may be used uninitialized [-Wmaybe-uninitialized]
88 | if(gsl_vector_get(rUniq_count, wh_ri) > 1) /* not singleton */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPsurv_Updates.c:48:31: note: 'wh_ri' was declared here
48 | int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
| ^~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BAFT_LNscr.c -o BAFT_LNscr.o
BAFT_LNscr.c: In function 'BAFTscrmcmc':
BAFT_LNscr.c:101:22: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
101 | gsl_matrix *X1 = gsl_matrix_calloc(*n, (nP1));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_LNscr.c:92:9: note: 'nP1' was declared here
92 | int nP1, nP2, nP3;
| ^~~
BAFT_LNscr.c:102:22: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
102 | gsl_matrix *X2 = gsl_matrix_calloc(*n, (nP2));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_LNscr.c:92:14: note: 'nP2' was declared here
92 | int nP1, nP2, nP3;
| ^~~
BAFT_LNscr.c:103:22: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
103 | gsl_matrix *X3 = gsl_matrix_calloc(*n, (nP3));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_LNscr.c:92:19: note: 'nP3' was declared here
92 | int nP1, nP2, nP3;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BAFT_LNscr_Updates.c -o BAFT_LNscr_Updates.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BAFT_LNsurv.c -o BAFT_LNsurv.o
BAFT_LNsurv.c: In function 'BAFTunimcmc':
BAFT_LNsurv.c:70:21: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
70 | gsl_matrix *X = gsl_matrix_calloc(*n, (nP));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_LNsurv.c:65:9: note: 'nP' was declared here
65 | int nP;
| ^~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BAFT_LNsurv_Updates.c -o BAFT_LNsurv_Updates.o
BAFT_LNsurv_Updates.c: In function 'BAFT_LNsurv_update_beta0':
BAFT_LNsurv_Updates.c:140:74: warning: variable 'logprior_prop' set but not used [-Wunused-but-set-variable]
140 | double eta, eta_prop, loglh, loglh_prop, logR, beta0_prop, logprior, logprior_prop;
| ^~~~~~~~~~~~~
BAFT_LNsurv_Updates.c:140:64: warning: variable 'logprior' set but not used [-Wunused-but-set-variable]
140 | double eta, eta_prop, loglh, loglh_prop, logR, beta0_prop, logprior, logprior_prop;
| ^~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeDpCorScr.c -o BpeDpCorScr.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeDpCorScrSM.c -o BpeDpCorScrSM.o
BpeDpCorScr.c: In function 'BpeDpCorScrmcmc':
BpeDpCorScr.c:127:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
127 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr.c:118:9: note: 'nP1' was declared here
118 | int nP1, nP2, nP3;
| ^~~
BpeDpCorScr.c:128:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
128 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr.c:118:14: note: 'nP2' was declared here
118 | int nP1, nP2, nP3;
| ^~~
BpeDpCorScr.c:129:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
129 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr.c:118:19: note: 'nP3' was declared here
118 | int nP1, nP2, nP3;
| ^~~
BpeDpCorScr.c:1041:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
1041 | theta_mean = ((double) StoreInx - 1) * theta_mean;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr.c:477:12: note: 'theta_mean' was declared here
477 | double theta_mean;
| ^~~~~~~~~~
BpeDpCorScr.c:573:47: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
573 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScr.c:483:66: note: 'pBI1' was declared here
483 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScr.c:573:54: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
573 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScr.c:483:72: note: 'pBI2' was declared here
483 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScr.c:573:61: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
573 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScr.c:483:78: note: 'pBI3' was declared here
483 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScr.c:573:68: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
573 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScr.c:483:84: note: 'pDI1' was declared here
483 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScr.c:573:75: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
573 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScr.c:483:90: note: 'pDI2' was declared here
483 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScr.c:573:82: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
573 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
BpeDpCorScr.c:483:96: note: 'pDI3' was declared here
483 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScrSM.c: In function 'BpeDpCorScrSMmcmc':
BpeDpCorScrSM.c:128:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
128 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM.c:119:9: note: 'nP1' was declared here
119 | int nP1, nP2, nP3;
| ^~~
BpeDpCorScrSM.c:129:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
129 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM.c:119:14: note: 'nP2' was declared here
119 | int nP1, nP2, nP3;
| ^~~
BpeDpCorScrSM.c:130:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
130 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM.c:119:19: note: 'nP3' was declared here
119 | int nP1, nP2, nP3;
| ^~~
BpeDpCorScrSM.c:1055:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
1055 | theta_mean = ((double) StoreInx - 1) * theta_mean;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM.c:482:13: note: 'theta_mean' was declared here
482 | double theta_mean;
| ^~~~~~~~~~
BpeDpCorScrSM.c:579:47: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
579 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScrSM.c:489:66: note: 'pBI1' was declared here
489 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScrSM.c:579:54: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
579 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScrSM.c:489:72: note: 'pBI2' was declared here
489 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScrSM.c:579:61: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
579 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScrSM.c:489:78: note: 'pBI3' was declared here
489 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScrSM.c:579:68: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
579 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScrSM.c:489:84: note: 'pDI1' was declared here
489 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScrSM.c:579:75: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
579 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScrSM.c:489:90: note: 'pDI2' was declared here
489 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScrSM.c:579:82: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
579 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
BpeDpCorScrSM.c:489:96: note: 'pDI3' was declared here
489 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeDpCorScrSM_Updates.c -o BpeDpCorScrSM_Updates.o
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH1':
BpeDpCorScrSM_Updates.c:507:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
507 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH2':
BpeDpCorScrSM_Updates.c:734:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
734 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH3':
BpeDpCorScrSM_Updates.c:948:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
948 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeDpCorScr_Updates.c -o BpeDpCorScr_Updates.o
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH1':
BpeDpCorScr_Updates.c:514:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
514 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH2':
BpeDpCorScr_Updates.c:746:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
746 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH3':
BpeDpCorScr_Updates.c:965:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
965 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH1':
BpeDpCorScrSM_Updates.c:577:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
577 | D1 += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScrSM_Updates.c:507:12: note: 'nu_lam' was declared here
507 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorScrSM_Updates.c:563:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
563 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM_Updates.c:498:27: note: 'Del' was declared here
498 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH2':
BpeDpCorScrSM_Updates.c:803:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
803 | D1 += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScrSM_Updates.c:734:12: note: 'nu_lam' was declared here
734 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorScrSM_Updates.c:789:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
789 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM_Updates.c:725:27: note: 'Del' was declared here
725 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH3':
BpeDpCorScrSM_Updates.c:1016:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
1016 | D1 += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScrSM_Updates.c:948:12: note: 'nu_lam' was declared here
948 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorScrSM_Updates.c:1004:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1004 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM_Updates.c:939:27: note: 'Del' was declared here
939 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH1':
BpeDpCorScr_Updates.c:587:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
587 | D1 += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScr_Updates.c:514:12: note: 'nu_lam' was declared here
514 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorScr_Updates.c:573:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
573 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr_Updates.c:505:27: note: 'Del' was declared here
505 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateDI1':
BpeDpCorScrSM_Updates.c:1831:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1831 | if(Del > 0)
| ^
BpeDpCorScrSM_Updates.c:1751:31: note: 'Del' was declared here
1751 | double logLH, logLH_prop, Del;
| ^~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH2':
BpeDpCorScr_Updates.c:814:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
814 | D1 += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScr_Updates.c:746:12: note: 'nu_lam' was declared here
746 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorScr_Updates.c:800:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
800 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr_Updates.c:737:27: note: 'Del' was declared here
737 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH3':
BpeDpCorScr_Updates.c:1034:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
1034 | D1 += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScr_Updates.c:965:12: note: 'nu_lam' was declared here
965 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorScr_Updates.c:1022:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1022 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr_Updates.c:956:27: note: 'Del' was declared here
956 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateDI2':
BpeDpCorScrSM_Updates.c:2420:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2420 | if(Del > 0)
| ^
BpeDpCorScrSM_Updates.c:2339:31: note: 'Del' was declared here
2339 | double logLH, logLH_prop, Del;
| ^~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateDI1':
BpeDpCorScr_Updates.c:1842:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1842 | if(Del > 0)
| ^
BpeDpCorScr_Updates.c:1763:31: note: 'Del' was declared here
1763 | double logLH, logLH_prop, Del;
| ^~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateDI3':
BpeDpCorScrSM_Updates.c:2996:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2996 | if(Del > 0)
| ^
BpeDpCorScrSM_Updates.c:2917:31: note: 'Del' was declared here
2917 | double logLH, logLH_prop, Del;
| ^~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateDI2':
BpeDpCorScr_Updates.c:2434:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2434 | if(Del > 0)
| ^
BpeDpCorScr_Updates.c:2352:31: note: 'Del' was declared here
2352 | double logLH, logLH_prop, Del;
| ^~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateDI3':
BpeDpCorScr_Updates.c:3019:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
3019 | if(Del > 0)
| ^
BpeDpCorScr_Updates.c:2939:31: note: 'Del' was declared here
2939 | double logLH, logLH_prop, Del;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeDpCorSurv.c -o BpeDpCorSurv.o
BpeDpCorSurv.c: In function 'BpeDpCorSurvmcmc':
BpeDpCorSurv.c:233:37: warning: variable 'pCP' set but not used [-Wunused-but-set-variable]
233 | double pRP, pBH, pSP, pBI, pDI, pCP, choice;
| ^~~
BpeDpCorSurv.c:95:31: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
95 | gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorSurv.c:90:9: note: 'nP' was declared here
90 | int nP;
| ^~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeDpCorSurv_Updates.c -o BpeDpCorSurv_Updates.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeMvnCorScr.c -o BpeMvnCorScr.o
BpeDpCorSurv_Updates.c: In function 'BpeDpCorSurv_updateBH':
BpeDpCorSurv_Updates.c:186:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
186 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorSurv_Updates.c: In function 'BpeDpCorSurv_updateCP':
BpeDpCorSurv_Updates.c:1261:18: warning: variable 'mu_temp' set but not used [-Wunused-but-set-variable]
1261 | double logR, mu_temp, zeta_temp;
| ^~~~~~~
BpeDpCorSurv_Updates.c: In function 'BpeDpCorSurv_updateBH':
BpeDpCorSurv_Updates.c:254:83: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
254 | D1 += -1/(sigSq_lam * gsl_matrix_get(Q, j, j))*(gsl_vector_get(lambda, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorSurv_Updates.c:186:12: note: 'nu_lam' was declared here
186 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorSurv_Updates.c:240:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
240 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorSurv_Updates.c:177:27: note: 'Del' was declared here
177 | double D1, D2, logLH, Del, inc;
| ^~~
BpeMvnCorScr.c: In function 'BpeMvnCorScrmcmc':
BpeMvnCorScr.c:108:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
108 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr.c:99:9: note: 'nP1' was declared here
99 | int nP1, nP2, nP3;
| ^~~
BpeMvnCorScr.c:109:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
109 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr.c:99:14: note: 'nP2' was declared here
99 | int nP1, nP2, nP3;
| ^~~
BpeMvnCorScr.c:110:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
110 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr.c:99:19: note: 'nP3' was declared here
99 | int nP1, nP2, nP3;
| ^~~
BpeMvnCorScr.c:1003:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
1003 | theta_mean = ((double) StoreInx - 1) * theta_mean;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr.c:413:12: note: 'theta_mean' was declared here
413 | double theta_mean;
| ^~~~~~~~~~
BpeMvnCorScr.c:506:41: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
506 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScr.c:418:66: note: 'pBI1' was declared here
418 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScr.c:506:48: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
506 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScr.c:418:72: note: 'pBI2' was declared here
418 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScr.c:506:55: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
506 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScr.c:418:78: note: 'pBI3' was declared here
418 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScr.c:506:62: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
506 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScr.c:418:84: note: 'pDI1' was declared here
418 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScr.c:506:69: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
506 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScr.c:418:90: note: 'pDI2' was declared here
418 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScr.c:506:76: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
506 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
BpeMvnCorScr.c:418:96: note: 'pDI3' was declared here
418 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeDpCorSurv_Updates.c: In function 'BpeDpCorSurv_updateDI':
BpeDpCorSurv_Updates.c:810:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
810 | if(Del > 0)
| ^
BpeDpCorSurv_Updates.c:731:31: note: 'Del' was declared here
731 | double logLH, logLH_prop, Del;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeMvnCorScrSM.c -o BpeMvnCorScrSM.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeMvnCorScrSM_Updates.c -o BpeMvnCorScrSM_Updates.o
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH1':
BpeMvnCorScrSM_Updates.c:503:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
503 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH2':
BpeMvnCorScrSM_Updates.c:731:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
731 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH3':
BpeMvnCorScrSM_Updates.c:954:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
954 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScrSM.c: In function 'BpeMvnCorScrSMmcmc':
BpeMvnCorScrSM.c:109:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
109 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM.c:100:9: note: 'nP1' was declared here
100 | int nP1, nP2, nP3;
| ^~~
BpeMvnCorScrSM.c:110:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
110 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM.c:100:14: note: 'nP2' was declared here
100 | int nP1, nP2, nP3;
| ^~~
BpeMvnCorScrSM.c:111:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
111 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM.c:100:19: note: 'nP3' was declared here
100 | int nP1, nP2, nP3;
| ^~~
BpeMvnCorScrSM.c:1058:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
1058 | theta_mean = ((double) StoreInx - 1) * theta_mean;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM.c:446:12: note: 'theta_mean' was declared here
446 | double theta_mean;
| ^~~~~~~~~~
BpeMvnCorScrSM.c:556:41: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
556 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScrSM.c:456:66: note: 'pBI1' was declared here
456 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScrSM.c:556:48: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
556 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScrSM.c:456:72: note: 'pBI2' was declared here
456 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScrSM.c:556:55: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
556 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScrSM.c:456:78: note: 'pBI3' was declared here
456 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScrSM.c:556:62: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
556 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScrSM.c:456:84: note: 'pDI1' was declared here
456 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScrSM.c:556:69: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
556 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScrSM.c:456:90: note: 'pDI2' was declared here
456 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScrSM.c:556:76: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
556 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
BpeMvnCorScrSM.c:456:96: note: 'pDI3' was declared here
456 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH1':
BpeMvnCorScrSM_Updates.c:573:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
573 | D1 += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScrSM_Updates.c:503:12: note: 'nu_lam' was declared here
503 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorScrSM_Updates.c:559:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
559 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM_Updates.c:494:27: note: 'Del' was declared here
494 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH2':
BpeMvnCorScrSM_Updates.c:802:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
802 | D1 += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScrSM_Updates.c:731:12: note: 'nu_lam' was declared here
731 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorScrSM_Updates.c:788:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
788 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM_Updates.c:722:27: note: 'Del' was declared here
722 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH3':
BpeMvnCorScrSM_Updates.c:1023:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
1023 | D1 += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScrSM_Updates.c:954:12: note: 'nu_lam' was declared here
954 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorScrSM_Updates.c:1010:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1010 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM_Updates.c:945:27: note: 'Del' was declared here
945 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateDI1':
BpeMvnCorScrSM_Updates.c:1831:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1831 | if(Del > 0)
| ^
BpeMvnCorScrSM_Updates.c:1748:31: note: 'Del' was declared here
1748 | double logLH, logLH_prop, Del;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeMvnCorScr_Updates.c -o BpeMvnCorScr_Updates.o
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateDI2':
BpeMvnCorScrSM_Updates.c:2423:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2423 | if(Del > 0)
| ^
BpeMvnCorScrSM_Updates.c:2342:31: note: 'Del' was declared here
2342 | double logLH, logLH_prop, Del;
| ^~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH1':
BpeMvnCorScr_Updates.c:503:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
503 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH2':
BpeMvnCorScr_Updates.c:732:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
732 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH3':
BpeMvnCorScr_Updates.c:955:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
955 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateDI3':
BpeMvnCorScrSM_Updates.c:2994:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2994 | if(Del > 0)
| ^
BpeMvnCorScrSM_Updates.c:2915:31: note: 'Del' was declared here
2915 | double logLH, logLH_prop, Del;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeMvnCorSurv.c -o BpeMvnCorSurv.o
BpeMvnCorSurv.c: In function 'BpeMvnCorSurvmcmc':
BpeMvnCorSurv.c:201:42: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
201 | double pRP, pBH, pSP, pBI, pDI, pCP, pVP, choice;
| ^~~
BpeMvnCorSurv.c:78:31: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
78 | gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorSurv.c:73:9: note: 'nP' was declared here
73 | int nP;
| ^~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH1':
BpeMvnCorScr_Updates.c:573:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
573 | D1 += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScr_Updates.c:503:12: note: 'nu_lam' was declared here
503 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorScr_Updates.c:559:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
559 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr_Updates.c:494:27: note: 'Del' was declared here
494 | double D1, D2, logLH, Del, inc, gam;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeMvnCorSurv_Updates.c -o BpeMvnCorSurv_Updates.o
BpeMvnCorSurv_Updates.c: In function 'BpeMvnCorSurv_updateBH':
BpeMvnCorSurv_Updates.c:181:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
181 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH2':
BpeMvnCorScr_Updates.c:803:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
803 | D1 += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScr_Updates.c:732:12: note: 'nu_lam' was declared here
732 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorScr_Updates.c:789:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
789 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr_Updates.c:723:27: note: 'Del' was declared here
723 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH3':
BpeMvnCorScr_Updates.c:1024:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
1024 | D1 += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScr_Updates.c:955:12: note: 'nu_lam' was declared here
955 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorScr_Updates.c:1011:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1011 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr_Updates.c:946:27: note: 'Del' was declared here
946 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeMvnCorSurv_Updates.c:249:83: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
249 | D1 += -1/(sigSq_lam * gsl_matrix_get(Q, j, j))*(gsl_vector_get(lambda, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorSurv_Updates.c:181:12: note: 'nu_lam' was declared here
181 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorSurv_Updates.c:235:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
235 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorSurv_Updates.c:172:27: note: 'Del' was declared here
172 | double D1, D2, logLH, Del, inc;
| ^~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateDI1':
BpeMvnCorScr_Updates.c:1848:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1848 | if(Del > 0)
| ^
BpeMvnCorScr_Updates.c:1764:31: note: 'Del' was declared here
1764 | double logLH, logLH_prop, Del;
| ^~~
BpeMvnCorSurv_Updates.c: In function 'BpeMvnCorSurv_updateDI':
BpeMvnCorSurv_Updates.c:820:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
820 | if(Del > 0)
| ^
BpeMvnCorSurv_Updates.c:740:31: note: 'Del' was declared here
740 | double logLH, logLH_prop, Del;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeScr.c -o BpeScr.o
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateDI2':
BpeMvnCorScr_Updates.c:2459:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2459 | if(Del > 0)
| ^
BpeMvnCorScr_Updates.c:2375:31: note: 'Del' was declared here
2375 | double logLH, logLH_prop, Del;
| ^~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateDI3':
BpeMvnCorScr_Updates.c:3056:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
3056 | if(Del > 0)
| ^
BpeMvnCorScr_Updates.c:2969:31: note: 'Del' was declared here
2969 | double logLH, logLH_prop, Del;
| ^~~
BpeScr.c: In function 'BpeScrmcmc':
BpeScr.c:91:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
91 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScr.c:82:9: note: 'nP1' was declared here
82 | int nP1, nP2, nP3;
| ^~~
BpeScr.c:92:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
92 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScr.c:82:14: note: 'nP2' was declared here
82 | int nP1, nP2, nP3;
| ^~~
BpeScr.c:93:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
93 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScr.c:82:19: note: 'nP3' was declared here
82 | int nP1, nP2, nP3;
| ^~~
BpeScr.c:398:35: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
398 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~^~~~~~
BpeScr.c:316:66: note: 'pBI1' was declared here
316 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScr.c:398:42: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
398 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~^~~~~~
BpeScr.c:316:72: note: 'pBI2' was declared here
316 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScr.c:398:49: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
398 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeScr.c:316:78: note: 'pBI3' was declared here
316 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScr.c:398:56: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
398 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeScr.c:316:84: note: 'pDI1' was declared here
316 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScr.c:398:63: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
398 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeScr.c:316:90: note: 'pDI2' was declared here
316 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScr.c:398:70: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
398 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
BpeScr.c:316:96: note: 'pDI3' was declared here
316 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeScrSM.c -o BpeScrSM.o
BpeScrSM.c: In function 'BpeScrSMmcmc':
BpeScrSM.c:92:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
92 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScrSM.c:83:9: note: 'nP1' was declared here
83 | int nP1, nP2, nP3;
| ^~~
BpeScrSM.c:93:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
93 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScrSM.c:83:14: note: 'nP2' was declared here
83 | int nP1, nP2, nP3;
| ^~~
BpeScrSM.c:94:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
94 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScrSM.c:83:19: note: 'nP3' was declared here
83 | int nP1, nP2, nP3;
| ^~~
BpeScrSM.c:408:35: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
408 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~^~~~~~
BpeScrSM.c:326:66: note: 'pBI1' was declared here
326 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScrSM.c:408:42: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
408 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~^~~~~~
BpeScrSM.c:326:72: note: 'pBI2' was declared here
326 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScrSM.c:408:49: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
408 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeScrSM.c:326:78: note: 'pBI3' was declared here
326 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScrSM.c:408:56: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
408 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeScrSM.c:326:84: note: 'pDI1' was declared here
326 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScrSM.c:408:63: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
408 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeScrSM.c:326:90: note: 'pDI2' was declared here
326 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScrSM.c:408:70: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
408 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
BpeScrSM.c:326:96: note: 'pDI3' was declared here
326 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeScrSM_Updates.c -o BpeScrSM_Updates.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeScr_Updates.c -o BpeScr_Updates.o
BpeScrSM_Updates.c: In function 'BscrSM_updateBH1':
BpeScrSM_Updates.c:519:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
519 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateBH2':
BpeScrSM_Updates.c:728:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
728 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateBH3':
BpeScrSM_Updates.c:949:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
949 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH1':
BpeScr_Updates.c:520:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
520 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH2':
BpeScr_Updates.c:736:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
736 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH3':
BpeScr_Updates.c:958:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
958 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateBH1':
BpeScrSM_Updates.c:588:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
588 | D1 += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScrSM_Updates.c:519:12: note: 'nu_lam' was declared here
519 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeScrSM_Updates.c:574:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
574 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScrSM_Updates.c:510:27: note: 'Del' was declared here
510 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeScr_Updates.c: In function 'Bscr_updateBH1':
BpeScr_Updates.c:589:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
589 | D1 += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScr_Updates.c:520:12: note: 'nu_lam' was declared here
520 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeScr_Updates.c:575:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
575 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScr_Updates.c:511:27: note: 'Del' was declared here
511 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeScr_Updates.c: In function 'Bscr_updateBH2':
BpeScr_Updates.c:804:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
804 | D1 += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScr_Updates.c:736:12: note: 'nu_lam' was declared here
736 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeScr_Updates.c:790:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
790 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScr_Updates.c:727:27: note: 'Del' was declared here
727 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeScrSM_Updates.c: In function 'BscrSM_updateBH2':
BpeScrSM_Updates.c:795:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
795 | D1 += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScrSM_Updates.c:728:12: note: 'nu_lam' was declared here
728 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeScrSM_Updates.c:781:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
781 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScrSM_Updates.c:719:27: note: 'Del' was declared here
719 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeScr_Updates.c: In function 'Bscr_updateBH3':
BpeScr_Updates.c:1027:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
1027 | D1 += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScr_Updates.c:958:12: note: 'nu_lam' was declared here
958 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeScr_Updates.c:1013:9: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1013 | gsl_vector_set(Delta, i, Del);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScr_Updates.c:949:27: note: 'Del' was declared here
949 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeScr_Updates.c: In function 'Bscr_updateDI1':
BpeScr_Updates.c:1861:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1861 | if(Del > 0)
| ^
BpeScr_Updates.c:1779:31: note: 'Del' was declared here
1779 | double logLH, logLH_prop, Del;
| ^~~
BpeScrSM_Updates.c: In function 'BscrSM_updateDI1':
BpeScrSM_Updates.c:1840:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1840 | if(Del > 0)
| ^
BpeScrSM_Updates.c:1760:31: note: 'Del' was declared here
1760 | double logLH, logLH_prop, Del;
| ^~~
BpeScr_Updates.c: In function 'Bscr_updateDI2':
BpeScr_Updates.c:2421:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2421 | if(Del > 0)
| ^
BpeScr_Updates.c:2340:31: note: 'Del' was declared here
2340 | double logLH, logLH_prop, Del;
| ^~~
BpeScrSM_Updates.c: In function 'BscrSM_updateDI2':
BpeScrSM_Updates.c:2378:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2378 | if(Del > 0)
| ^
BpeScrSM_Updates.c:2298:31: note: 'Del' was declared here
2298 | double logLH, logLH_prop, Del;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeSurv.c -o BpeSurv.o
BpeScr_Updates.c: In function 'Bscr_updateDI3':
BpeScr_Updates.c:2962:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2962 | if(Del > 0)
| ^
BpeScr_Updates.c:2883:31: note: 'Del' was declared here
2883 | double logLH, logLH_prop, Del;
| ^~~
BpeScrSM_Updates.c: In function 'BscrSM_updateDI3':
BpeScrSM_Updates.c:2916:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2916 | if(Del > 0)
| ^
BpeScrSM_Updates.c:2837:31: note: 'Del' was declared here
2837 | double logLH, logLH_prop, Del;
| ^~~
BpeSurv.c: In function 'BpeSurvmcmc':
BpeSurv.c:64:27: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
64 | gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
BpeSurv.c:59:9: note: 'nP' was declared here
59 | int nP;
| ^~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BpeSurv_Updates.c -o BpeSurv_Updates.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibCorSurv.c -o BweibCorSurv.o
BpeSurv_Updates.c: In function 'BpeSur_updateBH2':
BpeSurv_Updates.c:313:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
313 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeSurv_Updates.c: In function 'BpeSur_updateBH1':
BpeSurv_Updates.c:518:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
518 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BweibCorSurv.c: In function 'BweibCorSurvmcmc':
BweibCorSurv.c:144:32: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
144 | double pRP, pSH, pSC, pCP, pVP, choice;
| ^~~
BweibCorSurv.c:71:31: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
71 | gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
BweibCorSurv.c:66:9: note: 'nP' was declared here
66 | int nP;
| ^~
BpeSurv_Updates.c: In function 'BpeSur_updateBH2':
BpeSurv_Updates.c:374:83: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
374 | D1 += -1/(sigSq_lam * gsl_matrix_get(Q, j, j))*(gsl_vector_get(lambda, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeSurv_Updates.c:313:12: note: 'nu_lam' was declared here
313 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeSurv_Updates.c:364:11: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
364 | if(Del > 0)
| ^
BpeSurv_Updates.c:304:27: note: 'Del' was declared here
304 | double D1, D2, logLH, Del, inc;
| ^~~
BpeSurv_Updates.c: In function 'BpeSur_updateBH1':
BpeSurv_Updates.c:552:108: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
552 | D1 += gsl_vector_get(nEvent, j)-1/(sigSq_lam * gsl_matrix_get(Q, j, j))*(gsl_vector_get(lambda, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeSurv_Updates.c:518:12: note: 'nu_lam' was declared here
518 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeSurv_Updates.c: In function 'BpeSur_updateDI2':
BpeSurv_Updates.c:1360:15: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1360 | if(Del > 0)
| ^
BpeSurv_Updates.c:1283:31: note: 'Del' was declared here
1283 | double logLH, logLH_prop, Del;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibCorSurv_Updates.c -o BweibCorSurv_Updates.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibDpCorScr.c -o BweibDpCorScr.o
BweibDpCorScr.c: In function 'BweibDpCorScrmcmc':
BweibDpCorScr.c:118:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
118 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:109:9: note: 'nP1' was declared here
109 | int nP1, nP2, nP3;
| ^~~
BweibDpCorScr.c:119:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
119 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:109:14: note: 'nP2' was declared here
109 | int nP1, nP2, nP3;
| ^~~
BweibDpCorScr.c:120:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
120 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:109:19: note: 'nP3' was declared here
109 | int nP1, nP2, nP3;
| ^~~
BweibDpCorScr.c:721:25: warning: 'alpha1_mean' may be used uninitialized [-Wmaybe-uninitialized]
721 | alpha1_mean = ((double) StoreInx - 1) * alpha1_mean;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:345:12: note: 'alpha1_mean' was declared here
345 | double alpha1_mean, alpha2_mean, alpha3_mean;
| ^~~~~~~~~~~
BweibDpCorScr.c:725:25: warning: 'alpha2_mean' may be used uninitialized [-Wmaybe-uninitialized]
725 | alpha2_mean = ((double) StoreInx - 1) * alpha2_mean;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:345:25: note: 'alpha2_mean' was declared here
345 | double alpha1_mean, alpha2_mean, alpha3_mean;
| ^~~~~~~~~~~
BweibDpCorScr.c:729:25: warning: 'alpha3_mean' may be used uninitialized [-Wmaybe-uninitialized]
729 | alpha3_mean = ((double) StoreInx - 1) * alpha3_mean;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:345:38: note: 'alpha3_mean' was declared here
345 | double alpha1_mean, alpha2_mean, alpha3_mean;
| ^~~~~~~~~~~
BweibDpCorScr.c:733:25: warning: 'kappa1_mean' may be used uninitialized [-Wmaybe-uninitialized]
733 | kappa1_mean = ((double) StoreInx - 1) * kappa1_mean;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:346:12: note: 'kappa1_mean' was declared here
346 | double kappa1_mean, kappa2_mean, kappa3_mean;
| ^~~~~~~~~~~
BweibDpCorScr.c:737:25: warning: 'kappa2_mean' may be used uninitialized [-Wmaybe-uninitialized]
737 | kappa2_mean = ((double) StoreInx - 1) * kappa2_mean;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:346:25: note: 'kappa2_mean' was declared here
346 | double kappa1_mean, kappa2_mean, kappa3_mean;
| ^~~~~~~~~~~
BweibDpCorScr.c:741:25: warning: 'kappa3_mean' may be used uninitialized [-Wmaybe-uninitialized]
741 | kappa3_mean = ((double) StoreInx - 1) * kappa3_mean;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:346:38: note: 'kappa3_mean' was declared here
346 | double kappa1_mean, kappa2_mean, kappa3_mean;
| ^~~~~~~~~~~
BweibDpCorScr.c:745:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
745 | theta_mean = ((double) StoreInx - 1) * theta_mean;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:348:12: note: 'theta_mean' was declared here
348 | double theta_mean;
| ^~~~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibDpCorScrSM.c -o BweibDpCorScrSM.o
BweibDpCorScrSM.c: In function 'BweibDpCorScrSMmcmc':
BweibDpCorScrSM.c:120:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
120 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScrSM.c:111:9: note: 'nP1' was declared here
111 | int nP1, nP2, nP3;
| ^~~
BweibDpCorScrSM.c:121:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
121 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScrSM.c:111:14: note: 'nP2' was declared here
111 | int nP1, nP2, nP3;
| ^~~
BweibDpCorScrSM.c:122:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
122 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScrSM.c:111:19: note: 'nP3' was declared here
111 | int nP1, nP2, nP3;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibDpCorScrSM_Updates.c -o BweibDpCorScrSM_Updates.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibDpCorScr_Updates.c -o BweibDpCorScr_Updates.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibDpCorSurv.c -o BweibDpCorSurv.o
BweibDpCorSurv.c: In function 'BweibDpCorSurvmcmc':
BweibDpCorSurv.c:88:31: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
88 | gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorSurv.c:83:9: note: 'nP' was declared here
83 | int nP;
| ^~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibDpCorSurv_Updates.c -o BweibDpCorSurv_Updates.o
BweibDpCorSurv_Updates.c: In function 'BweibDpCorSurv_updateCP':
BweibDpCorSurv_Updates.c:553:18: warning: variable 'mu_temp' set but not used [-Wunused-but-set-variable]
553 | double logR, mu_temp, zeta_temp;
| ^~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibMvnCorScr.c -o BweibMvnCorScr.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibMvnCorScrSM.c -o BweibMvnCorScrSM.o
BweibMvnCorScr.c: In function 'BweibMvnCorScrmcmc':
BweibMvnCorScr.c:320:99: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
320 | double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, pMP, pCP1, pCP2, pCP3, pVP, choice;
| ^~~
BweibMvnCorScrSM.c: In function 'BweibMvnCorScrSMmcmc':
BweibMvnCorScrSM.c:335:99: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
335 | double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, pMP, pCP1, pCP2, pCP3, pVP, choice;
| ^~~
BweibMvnCorScr.c:102:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
102 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScr.c:93:9: note: 'nP1' was declared here
93 | int nP1, nP2, nP3;
| ^~~
BweibMvnCorScr.c:103:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
103 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScr.c:93:14: note: 'nP2' was declared here
93 | int nP1, nP2, nP3;
| ^~~
BweibMvnCorScr.c:104:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
104 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScr.c:93:19: note: 'nP3' was declared here
93 | int nP1, nP2, nP3;
| ^~~
BweibMvnCorScrSM.c:102:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
102 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScrSM.c:93:9: note: 'nP1' was declared here
93 | int nP1, nP2, nP3;
| ^~~
BweibMvnCorScrSM.c:103:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
103 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScrSM.c:93:14: note: 'nP2' was declared here
93 | int nP1, nP2, nP3;
| ^~~
BweibMvnCorScrSM.c:104:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
104 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScrSM.c:93:19: note: 'nP3' was declared here
93 | int nP1, nP2, nP3;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibMvnCorScrSM_Updates.c -o BweibMvnCorScrSM_Updates.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibMvnCorScr_Updates.c -o BweibMvnCorScr_Updates.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibScr.c -o BweibScr.o
BweibScr.c: In function 'BweibScrmcmc':
BweibScr.c:231:71: warning: variable 'pFP' set but not used [-Wunused-but-set-variable]
231 | double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, choice;
| ^~~
BweibScr.c:85:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
85 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScr.c:76:9: note: 'nP1' was declared here
76 | int nP1, nP2, nP3;
| ^~~
BweibScr.c:86:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
86 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScr.c:76:14: note: 'nP2' was declared here
76 | int nP1, nP2, nP3;
| ^~~
BweibScr.c:87:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
87 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScr.c:76:19: note: 'nP3' was declared here
76 | int nP1, nP2, nP3;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibScrSM.c -o BweibScrSM.o
BweibScrSM.c: In function 'BweibScrSMmcmc':
BweibScrSM.c:237:71: warning: variable 'pFP' set but not used [-Wunused-but-set-variable]
237 | double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, choice;
| ^~~
BweibScrSM.c:85:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
85 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScrSM.c:76:9: note: 'nP1' was declared here
76 | int nP1, nP2, nP3;
| ^~~
BweibScrSM.c:86:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
86 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScrSM.c:76:14: note: 'nP2' was declared here
76 | int nP1, nP2, nP3;
| ^~~
BweibScrSM.c:87:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
87 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScrSM.c:76:19: note: 'nP3' was declared here
76 | int nP1, nP2, nP3;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibScrSM_Updates.c -o BweibScrSM_Updates.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibScr_Updates.c -o BweibScr_Updates.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibSurv.c -o BweibSurv.o
BweibSurv.c: In function 'BweibSurvmcmc':
BweibSurv.c:109:22: warning: variable 'pSC' set but not used [-Wunused-but-set-variable]
109 | double pRP, pSH, pSC, choice;
| ^~~
BweibSurv.c:62:27: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
62 | gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
BweibSurv.c:57:9: note: 'nP' was declared here
57 | int nP;
| ^~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c BweibSurv_Updates.c -o BweibSurv_Updates.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c Utilities.c -o Utilities.o
Utilities.c: In function 'log_fg_BAFT_DP':
Utilities.c:6029:64: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
6029 | double mu_k, sigSq_k, mixProb_den, val1, val2, log1, logk, temp;
| ^~~~
Utilities.c:6029:58: warning: variable 'logk' set but not used [-Wunused-but-set-variable]
6029 | double mu_k, sigSq_k, mixProb_den, val1, val2, log1, logk, temp;
| ^~~~
Utilities.c:6029:52: warning: variable 'log1' set but not used [-Wunused-but-set-variable]
6029 | double mu_k, sigSq_k, mixProb_den, val1, val2, log1, logk, temp;
| ^~~~
Utilities.c: In function 'log_Jpdf_Upper_BAFT_LN':
Utilities.c:6382:35: warning: variable 'y2_temp' set but not used [-Wunused-but-set-variable]
6382 | double eta1, eta2, eta3, gam, y2_temp;
| ^~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c registerDynamicSymbol.c -o registerDynamicSymbol.o
Utilities.c: In function 'c_multinom_sample':
Utilities.c:3487:5: warning: '<unknown>' may be used uninitialized [-Wmaybe-uninitialized]
3487 | gsl_ran_multinomial(rr, KK, 1, probK, samples);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from Utilities.c:14:
/usr/include/gsl/gsl_randist.h:154:6: note: by argument 4 of type 'const double[]' to 'gsl_ran_multinomial' declared here
154 | void gsl_ran_multinomial (const gsl_rng * r, const size_t K,
| ^~~~~~~~~~~~~~~~~~~
Utilities.c:3494:12: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized]
3494 | return val;
| ^~~
Utilities.c:3476:13: note: 'val' was declared here
3476 | int ii, val;
| ^~~
Utilities.c: In function 'BweibMvnCorScr_logMLH_DIC':
Utilities.c:6630:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
6630 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6621:9: note: 'nP1' was declared here
6621 | int nP1, nP2, nP3;
| ^~~
Utilities.c:6631:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
6631 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6621:14: note: 'nP2' was declared here
6621 | int nP1, nP2, nP3;
| ^~~
Utilities.c:6632:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
6632 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6621:19: note: 'nP3' was declared here
6621 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BweibMvnCorScrSM_logMLH_DIC':
Utilities.c:6813:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
6813 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6804:9: note: 'nP1' was declared here
6804 | int nP1, nP2, nP3;
| ^~~
Utilities.c:6814:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
6814 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6804:14: note: 'nP2' was declared here
6804 | int nP1, nP2, nP3;
| ^~~
Utilities.c:6815:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
6815 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6804:19: note: 'nP3' was declared here
6804 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BweibDpCorScr_logMLH_DIC':
Utilities.c:6992:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
6992 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6983:9: note: 'nP1' was declared here
6983 | int nP1, nP2, nP3;
| ^~~
Utilities.c:6993:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
6993 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6983:14: note: 'nP2' was declared here
6983 | int nP1, nP2, nP3;
| ^~~
Utilities.c:6994:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
6994 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6983:19: note: 'nP3' was declared here
6983 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BweibDpCorScrSM_logMLH_DIC':
Utilities.c:7176:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
7176 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7167:9: note: 'nP1' was declared here
7167 | int nP1, nP2, nP3;
| ^~~
Utilities.c:7177:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
7177 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7167:14: note: 'nP2' was declared here
7167 | int nP1, nP2, nP3;
| ^~~
Utilities.c:7178:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
7178 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7167:19: note: 'nP3' was declared here
7167 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BpeMvnCorScr_logMLH_DIC':
Utilities.c:7364:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
7364 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7355:9: note: 'nP1' was declared here
7355 | int nP1, nP2, nP3;
| ^~~
Utilities.c:7365:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
7365 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7355:14: note: 'nP2' was declared here
7355 | int nP1, nP2, nP3;
| ^~~
Utilities.c:7366:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
7366 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7355:19: note: 'nP3' was declared here
7355 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BpeMvnCorScrSM_logMLH_DIC':
Utilities.c:7595:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
7595 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7586:9: note: 'nP1' was declared here
7586 | int nP1, nP2, nP3;
| ^~~
Utilities.c:7596:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
7596 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7586:14: note: 'nP2' was declared here
7586 | int nP1, nP2, nP3;
| ^~~
Utilities.c:7597:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
7597 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7586:19: note: 'nP3' was declared here
7586 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BweibScr_logMLH_DIC':
Utilities.c:8450:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
8450 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8441:9: note: 'nP1' was declared here
8441 | int nP1, nP2, nP3;
| ^~~
Utilities.c:8451:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
8451 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8441:14: note: 'nP2' was declared here
8441 | int nP1, nP2, nP3;
| ^~~
Utilities.c:8452:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
8452 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8441:19: note: 'nP3' was declared here
8441 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BweibScrSM_logMLH_DIC':
Utilities.c:8619:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
8619 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8610:9: note: 'nP1' was declared here
8610 | int nP1, nP2, nP3;
| ^~~
Utilities.c:8620:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
8620 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8610:14: note: 'nP2' was declared here
8610 | int nP1, nP2, nP3;
| ^~~
Utilities.c:8621:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
8621 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8610:19: note: 'nP3' was declared here
8610 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BpeScr_logMLH_DIC':
Utilities.c:9128:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
9128 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9119:9: note: 'nP1' was declared here
9119 | int nP1, nP2, nP3;
| ^~~
Utilities.c:9129:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
9129 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9119:14: note: 'nP2' was declared here
9119 | int nP1, nP2, nP3;
| ^~~
Utilities.c:9130:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
9130 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9119:19: note: 'nP3' was declared here
9119 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BpeScrSM_logMLH_DIC':
Utilities.c:9709:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
9709 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9700:9: note: 'nP1' was declared here
9700 | int nP1, nP2, nP3;
| ^~~
Utilities.c:9710:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
9710 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9700:14: note: 'nP2' was declared here
9700 | int nP1, nP2, nP3;
| ^~~
Utilities.c:9711:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
9711 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9700:19: note: 'nP3' was declared here
9700 | int nP1, nP2, nP3;
| ^~~
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o SemiCompRisks.so BAFT_DPscr.o BAFT_DPscr_Updates.o BAFT_DPsurv.o BAFT_DPsurv_Updates.o BAFT_LNscr.o BAFT_LNscr_Updates.o BAFT_LNsurv.o BAFT_LNsurv_Updates.o BpeDpCorScr.o BpeDpCorScrSM.o BpeDpCorScrSM_Updates.o BpeDpCorScr_Updates.o BpeDpCorSurv.o BpeDpCorSurv_Updates.o BpeMvnCorScr.o BpeMvnCorScrSM.o BpeMvnCorScrSM_Updates.o BpeMvnCorScr_Updates.o BpeMvnCorSurv.o BpeMvnCorSurv_Updates.o BpeScr.o BpeScrSM.o BpeScrSM_Updates.o BpeScr_Updates.o BpeSurv.o BpeSurv_Updates.o BweibCorSurv.o BweibCorSurv_Updates.o BweibDpCorScr.o BweibDpCorScrSM.o BweibDpCorScrSM_Updates.o BweibDpCorScr_Updates.o BweibDpCorSurv.o BweibDpCorSurv_Updates.o BweibMvnCorScr.o BweibMvnCorScrSM.o BweibMvnCorScrSM_Updates.o BweibMvnCorScr_Updates.o BweibScr.o BweibScrSM.o BweibScrSM_Updates.o BweibScr_Updates.o BweibSurv.o BweibSurv_Updates.o Utilities.o registerDynamicSymbol.o -L/usr/local/lib -lgsl -lgslcblas -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/SemiCompRisks/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/SemiCompRisks/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/SemiCompRisks/src'
installing to /data/gannet/ripley/R/packages/tests-devel/SemiCompRisks.Rcheck/00LOCK-SemiCompRisks/00new/SemiCompRisks/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SemiCompRisks)