* installing *source* package ‘Ryacas’ ...
** package ‘Ryacas’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++14
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Ryacas/src'
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/anumber.cpp -o yacas/src/anumber.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/arggetter.cpp -o yacas/src/arggetter.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/associationclass.cpp -o yacas/src/associationclass.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/deffile.cpp -o yacas/src/deffile.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/errors.cpp -o yacas/src/errors.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/infixparser.cpp -o yacas/src/infixparser.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/lispatom.cpp -o yacas/src/lispatom.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/lispenvironment.cpp -o yacas/src/lispenvironment.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/lisperror.cpp -o yacas/src/lisperror.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/lispeval.cpp -o yacas/src/lispeval.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/lispevalhash.cpp -o yacas/src/lispevalhash.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/lisphash.cpp -o yacas/src/lisphash.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/lispio.cpp -o yacas/src/lispio.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/lispobject.cpp -o yacas/src/lispobject.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/lispparser.cpp -o yacas/src/lispparser.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/lispuserfunc.cpp -o yacas/src/lispuserfunc.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/mathcommands2.cpp -o yacas/src/mathcommands2.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/mathcommands3.cpp -o yacas/src/mathcommands3.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/mathcommands.cpp -o yacas/src/mathcommands.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/mathuserfunc.cpp -o yacas/src/mathuserfunc.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/mempool.cpp -o yacas/src/mempool.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/nn.cpp -o yacas/src/nn.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/numbers.cpp -o yacas/src/numbers.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/patcher.cpp -o yacas/src/patcher.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/patternclass.cpp -o yacas/src/patternclass.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/patterns.cpp -o yacas/src/patterns.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/platmath.cpp -o yacas/src/platmath.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/standard.cpp -o yacas/src/standard.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/stdfileio.cpp -o yacas/src/stdfileio.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/stringio.cpp -o yacas/src/stringio.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/substitute.cpp -o yacas/src/substitute.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/tokenizer.cpp -o yacas/src/tokenizer.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/xmltokenizer.cpp -o yacas/src/xmltokenizer.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/yacasapi.cpp -o yacas/src/yacasapi.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/yacasnumbers.cpp -o yacas/src/yacasnumbers.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c yacas/src/zz.cpp -o yacas/src/zz.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Iyacas/include -DNO_GLOBALS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ryacas.cpp -o ryacas.o
g++-13 -std=gnu++14 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o Ryacas.so yacas/src/anumber.o yacas/src/arggetter.o yacas/src/associationclass.o yacas/src/deffile.o yacas/src/errors.o yacas/src/infixparser.o yacas/src/lispatom.o yacas/src/lispenvironment.o yacas/src/lisperror.o yacas/src/lispeval.o yacas/src/lispevalhash.o yacas/src/lisphash.o yacas/src/lispio.o yacas/src/lispobject.o yacas/src/lispparser.o yacas/src/lispuserfunc.o yacas/src/mathcommands2.o yacas/src/mathcommands3.o yacas/src/mathcommands.o yacas/src/mathuserfunc.o yacas/src/mempool.o yacas/src/nn.o yacas/src/numbers.o yacas/src/patcher.o yacas/src/patternclass.o yacas/src/patterns.o yacas/src/platmath.o yacas/src/standard.o yacas/src/stdfileio.o yacas/src/stringio.o yacas/src/substitute.o yacas/src/tokenizer.o yacas/src/xmltokenizer.o yacas/src/yacasapi.o yacas/src/yacasnumbers.o yacas/src/zz.o RcppExports.o ryacas.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Ryacas/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Ryacas/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Ryacas/src'
installing to /data/gannet/ripley/R/packages/tests-devel/Ryacas.Rcheck/00LOCK-Ryacas/00new/Ryacas/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Ryacas)