* installing *source* package ‘RcppJagger’ ...
** package ‘RcppJagger’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppJagger/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c main.cpp -o main.o
In file included from main.cpp:2:
../inst/include/jagger.cc: In static member function 'static void jagger::tagger::write_buffer(char*&, char*, size_t)':
../inst/include/jagger.cc:61:19: warning: comparison of integer expressions of different signedness: 'long int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare]
   61 |       if (p - buf <= limit) return;
      |           ~~~~~~~~^~~~~~~~
../inst/include/jagger.cc: In member function 'void jagger::tagger::read_model(const std::string&)':
../inst/include/jagger.cc:110:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<long unsigned int, int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  110 |         for (int u = 0; u < counter.size (); ++u) // allow 43 bits for counting
      |                         ~~^~~~~~~~~~~~~~~~~
../inst/include/jagger.cc:178:46: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  178 |           for (int offset (0), b (0); offset < it->first.size (); offset += b)
      |                                       ~~~~~~~^~~~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o RcppJagger.so RcppExports.o main.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppJagger/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppJagger/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppJagger/src'
installing to /data/gannet/ripley/R/packages/tests-devel/RcppJagger.Rcheck/00LOCK-RcppJagger/00new/RcppJagger/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppJagger)