Install log for 'RLRsim'

* installing *source* package ‘RLRsim’ ...
** package ‘RLRsim’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RLRsim/src'
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RLRsim.cpp -o RLRsim.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:188,
                 from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
                 from RLRsim.cpp:3:
In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]',
    inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:465:46,
    inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:489:40,
    inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:744:34,
    inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
    inlined from 'static SEXPREC* Rcpp::internal::generic_element_converter<RTYPE>::get(const T&) [with T = double; int RTYPE = 19]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/converter.h:80:23,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch__isArgument(Rcpp::traits::false_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:532:13,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch(Rcpp::traits::true_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:525:46,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element(iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:514:34,
    inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create__dispatch(Rcpp::traits::true_type, const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&) [with T1 = Rcpp::traits::named_object<Rcpp::Vector<14, Rcpp::PreserveStorage> >; T2 = Rcpp::traits::named_object<Rcpp::Vector<13> >; T3 = Rcpp::traits::named_object<Rcpp::Matrix<14> >; T4 = Rcpp::traits::named_object<Rcpp::Matrix<14> >; T5 = Rcpp::traits::named_object<Rcpp::Matrix<14> >; T6 = Rcpp::traits::named_object<Rcpp::Vector<14, Rcpp::PreserveStorage> >; T7 = Rcpp::traits::named_object<Rcpp::Vector<14, Rcpp::PreserveStorage> >; T8 = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/generated/Vector__create.h:433:24,
    inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&) [with T1 = Rcpp::traits::named_object<Rcpp::Vector<14, Rcpp::PreserveStorage> >; T2 = Rcpp::traits::named_object<Rcpp::Vector<13> >; T3 = Rcpp::traits::named_object<Rcpp::Matrix<14> >; T4 = Rcpp::traits::named_object<Rcpp::Matrix<14> >; T5 = Rcpp::traits::named_object<Rcpp::Matrix<14> >; T6 = Rcpp::traits::named_object<Rcpp::Vector<14, Rcpp::PreserveStorage> >; T7 = Rcpp::traits::named_object<Rcpp::Vector<14, Rcpp::PreserveStorage> >; T8 = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/generated/Vector__create.h:394:45,
    inlined from 'Rcpp::List RLRsimCpp(int, int, int, int, int, int, Rcpp::NumericVector, Rcpp::NumericVector, double, Rcpp::NumericVector, bool)' at RLRsim.cpp:105:23:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:442:41: warning: 'ChiK' may be used uninitialized [-Wmaybe-uninitialized]
  442 |             r_vector_start<RTYPE>(x)[0] = object;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
RLRsim.cpp: In function 'Rcpp::List RLRsimCpp(int, int, int, int, int, int, Rcpp::NumericVector, Rcpp::NumericVector, double, Rcpp::NumericVector, bool)':
RLRsim.cpp:36:23: note: 'ChiK' was declared here
   36 |     double  LR, N, D, ChiK, ChiSum ;
      |                       ^~~~
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o RLRsim.so RLRsim.o RcppExports.o init.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RLRsim/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RLRsim/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RLRsim/src'
installing to /data/gannet/ripley/R/packages/tests-devel/RLRsim.Rcheck/00LOCK-RLRsim/00new/RLRsim/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RLRsim)