* installing *source* package ‘PKPDsim’ ... ** package ‘PKPDsim’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/PKPDsim/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c pk_1cmt_iv_bolus.cpp -o pk_1cmt_iv_bolus.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c pk_1cmt_iv_bolus_covariates.cpp -o pk_1cmt_iv_bolus_covariates.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c pk_1cmt_iv_infusion.cpp -o pk_1cmt_iv_infusion.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c pk_1cmt_oral.cpp -o pk_1cmt_oral.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c pk_2cmt_iv_bolus.cpp -o pk_2cmt_iv_bolus.o pk_1cmt_iv_bolus_covariates.cpp: In function 'Rcpp::DataFrame pk_1cmt_iv_bolus_covariates(Rcpp::DataFrame, Rcpp::List, Rcpp::StringVector, Rcpp::Function)': pk_1cmt_iv_bolus_covariates.cpp:8:10: warning: unused variable 'CLi' [-Wunused-variable] 8 | double CLi, Vi, tmp; | ^~~ pk_1cmt_iv_bolus_covariates.cpp:8:15: warning: unused variable 'Vi' [-Wunused-variable] 8 | double CLi, Vi, tmp; | ^~ pk_1cmt_iv_bolus_covariates.cpp:8:19: warning: unused variable 'tmp' [-Wunused-variable] 8 | double CLi, Vi, tmp; | ^~~ pk_1cmt_iv_bolus_covariates.cpp:12:10: warning: unused variable 'CL' [-Wunused-variable] 12 | double CL = parameters["CL"]; | ^~ pk_1cmt_iv_bolus_covariates.cpp:13:10: warning: unused variable 'V' [-Wunused-variable] 13 | double V = parameters["V"]; | ^ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c pk_2cmt_iv_infusion.cpp -o pk_2cmt_iv_infusion.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c pk_2cmt_oral.cpp -o pk_2cmt_oral.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c pk_3cmt_iv_bolus.cpp -o pk_3cmt_iv_bolus.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c pk_3cmt_iv_infusion.cpp -o pk_3cmt_iv_infusion.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c pk_3cmt_oral.cpp -o pk_3cmt_oral.o pk_2cmt_oral.cpp: In function 'Rcpp::DataFrame pk_2cmt_oral(Rcpp::DataFrame)': pk_2cmt_oral.cpp:8:14: warning: unused variable 'k10' [-Wunused-variable] 8 | double ka, k10, k20, k30, k23, k32, E1, E2, E3, lambda1, lambda2, t, A1last, A2last, A3last, A2term1, A2term2, A3term1, A3term2; | ^~~ pk_2cmt_oral.cpp:8:39: warning: unused variable 'E1' [-Wunused-variable] 8 | double ka, k10, k20, k30, k23, k32, E1, E2, E3, lambda1, lambda2, t, A1last, A2last, A3last, A2term1, A2term2, A3term1, A3term2; | ^~ pk_3cmt_oral.cpp: In function 'Rcpp::DataFrame pk_3cmt_oral(Rcpp::DataFrame)': pk_3cmt_oral.cpp:8:14: warning: unused variable 'k10' [-Wunused-variable] 8 | double ka, k10, k20, k23, k32, k24, k42, k30, k40, E1, E2, E3, E4; | ^~~ pk_3cmt_oral.cpp:8:54: warning: unused variable 'E1' [-Wunused-variable] 8 | double ka, k10, k20, k23, k32, k24, k42, k30, k40, E1, E2, E3, E4; | ^~ pk_3cmt_oral.cpp:10:42: warning: unused variable 'A1term1' [-Wunused-variable] 10 | double A1last, A2last, A3last, A4last, A1term1, A1term2, A2term1, A2term2, A2term3, A3term1, A3term2, A3term3, A4term1, A4term2, A4term3; | ^~~~~~~ pk_3cmt_oral.cpp:10:51: warning: unused variable 'A1term2' [-Wunused-variable] 10 | double A1last, A2last, A3last, A4last, A1term1, A1term2, A2term1, A2term2, A2term3, A3term1, A3term2, A3term3, A4term1, A4term2, A4term3; | ^~~~~~~ g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o PKPDsim.so RcppExports.o pk_1cmt_iv_bolus.o pk_1cmt_iv_bolus_covariates.o pk_1cmt_iv_infusion.o pk_1cmt_oral.o pk_2cmt_iv_bolus.o pk_2cmt_iv_infusion.o pk_2cmt_oral.o pk_3cmt_iv_bolus.o pk_3cmt_iv_infusion.o pk_3cmt_oral.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/PKPDsim/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/PKPDsim/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/PKPDsim/src' installing to /data/gannet/ripley/R/packages/tests-devel/PKPDsim.Rcheck/00LOCK-PKPDsim/00new/PKPDsim/libs ** R ** data *** moving datasets to lazyload DB ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PKPDsim)