* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/MVR.Rcheck’
* using R Under development (unstable) (2024-04-05 r86344)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘MVR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MVR’ version ‘1.33.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MVR’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/MVR-00install.html' for details.
* used C++ compiler: ‘g++-13 (GCC) 13.2.0’
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) cluster.diagnostic.Rd:35: Lost braces; missing escapes or markup?
    35 |                 Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
       |                                                                                                        ^
checkRd: (-1) cluster.diagnostic.Rd:36: Lost braces; missing escapes or markup?
    36 |   \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
       |                                        ^
checkRd: (-1) mvr.Rd:108: Lost braces
   108 |             \item membership {\code{numeric} \code{vector} of cluster membership of each variable}
       |                              ^
checkRd: (-1) mvr.Rd:109: Lost braces
   109 |             \item nc {Positive \code{integer} scalar of number of clusters found in optimal cluster configuration}
       |                      ^
checkRd: (-1) mvr.Rd:110: Lost braces
   110 |             \item gap {\code{numeric} \code{vector} of the similarity statistic values}
       |                       ^
checkRd: (-1) mvr.Rd:111: Lost braces
   111 |             \item sde {\code{numeric} \code{vector} of the standard errors of the similarity statistic values}
       |                       ^
checkRd: (-1) mvr.Rd:112-113: Lost braces
   112 |             \item mu.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized means by groups (rows), 
       |                          ^
checkRd: (-1) mvr.Rd:113: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:114-115: Lost braces
   114 |             \item sd.std {\code{numeric} \code{matrix} (\code{K} x p) of the vector of standardized standard deviations by groups (rows),
       |                          ^
checkRd: (-1) mvr.Rd:115: Escaped LaTeX specials: \#
checkRd: (-1) mvr.Rd:116: Lost braces
   116 |             \item mu.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of means}
       |                            ^
checkRd: (-1) mvr.Rd:117: Lost braces
   117 |             \item sd.quant {\code{numeric} \code{matrix} (\code{nc.max} - \code{nc.min} + 1) x (length(\code{probs})) of quantiles of standard deviations}
       |                            ^
checkRd: (-1) stabilization.diagnostic.Rd:31: Lost braces; missing escapes or markup?
    31 |                 Defaults to 2. (Normally 1 or 2. Degree 0 is also allowed, but see the "Note" in loess {stats} package.)}
       |                                                                                                        ^
checkRd: (-1) stabilization.diagnostic.Rd:32: Lost braces; missing escapes or markup?
    32 |   \item{family}{Family distribution in {"gaussian", "symmetric"} of the \code{loess()} function (R package \pkg{stats}), used for local fitting .
       |                                        ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking PDF version of manual ... [10s/15s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE