* installing *source* package ‘LCMCR’ ... ** package ‘LCMCR’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-13 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-13 accepts -g... yes checking for gcc-13 option to enable C11 features... none needed checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 2.5... yes checking for inline... inline configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/LCMCR/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c R_Interface/registration.cpp -o R_Interface/registration.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c R_Interface/R_Lcm_CR.cpp -o R_Interface/R_Lcm_CR.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NPLCM_CR_Basic_Freq.cpp -o NPLCM_CR_Basic_Freq.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c daniel2/R_Environ_Simple.cpp -o daniel2/R_Environ_Simple.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c daniel2/CChain.cpp -o daniel2/CChain.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c daniel2/CParam.cpp -o daniel2/CParam.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c daniel2/CData.cpp -o daniel2/CData.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c daniel2/CParam_generic.cpp -o daniel2/CParam_generic.o daniel2/CParam_generic.cpp:55: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] 55 | #pragma omp critical | g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c daniel2/CVariable_Container.cpp -o daniel2/CVariable_Container.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c daniel2/dan_array_utils.cpp -o daniel2/dan_array_utils.o g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o LCMCR.so R_Interface/registration.o R_Interface/R_Lcm_CR.o ./NPLCM_CR_Basic_Freq.o daniel2/R_Environ_Simple.o daniel2/CChain.o daniel2/CParam.o daniel2/CData.o daniel2/CParam_generic.o daniel2/CVariable_Container.o daniel2/dan_array_utils.o -lgsl -lgslcblas -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/LCMCR/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/LCMCR/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/LCMCR/src' installing to /data/gannet/ripley/R/packages/tests-devel/LCMCR.Rcheck/00LOCK-LCMCR/00new/LCMCR/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LCMCR)