* installing *source* package ‘HDCD’ ... ** package ‘HDCD’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/HDCD/src' gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c esac_code.c -o esac_code.o esac_code.c: In function 'internal_check_segment': esac_code.c:92:9: warning: unused variable 'tmppos' [-Wunused-variable] 92 | int tmppos = 0; | ^~~~~~ esac_code.c: In function 'cESAC': esac_code.c:852:9: warning: variable 'minlen' set but not used [-Wunused-but-set-variable] 852 | int minlen = n; | ^~~~~~ esac_code.c: In function 'cESAC_calibrate': esac_code.c:1091:9: warning: variable 'minlen' set but not used [-Wunused-but-set-variable] 1091 | int minlen = n; | ^~~~~~ esac_code.c: In function 'cESAC_single': esac_code.c:1536:9: warning: variable 'minlen' set but not used [-Wunused-but-set-variable] 1536 | int minlen = n; | ^~~~~~ esac_code.c:1535:9: warning: variable 'maxlen' set but not used [-Wunused-but-set-variable] 1535 | int maxlen = p; | ^~~~~~ esac_code.c: In function 'cESAC_test': esac_code.c:1653:9: warning: unused variable 'localdetected' [-Wunused-variable] 1653 | int localdetected = 0; | ^~~~~~~~~~~~~ esac_code.c:1645:9: warning: unused variable 'tmpapos' [-Wunused-variable] 1645 | int tmpapos = 0; | ^~~~~~~ esac_code.c:1644:9: warning: unused variable 'tmppos' [-Wunused-variable] 1644 | int tmppos = 0; | ^~~~~~ esac_code.c:1643:12: warning: unused variable 'tmpmax' [-Wunused-variable] 1643 | double tmpmax = 0; | ^~~~~~ esac_code.c:1607:9: warning: variable 'minlen' set but not used [-Wunused-but-set-variable] 1607 | int minlen = n; | ^~~~~~ esac_code.c:1602:9: warning: unused variable 'debug' [-Wunused-variable] 1602 | int debug = *INTEGER(debugI); | ^~~~~ esac_code.c: In function 'cESAC_test_calibrate': esac_code.c:1878:9: warning: variable 'minlen' set but not used [-Wunused-but-set-variable] 1878 | int minlen = n; | ^~~~~~ gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c helpfunctions.c -o helpfunctions.o helpfunctions.c: In function 'singleCUSUM': helpfunctions.c:295:9: warning: unused variable 'n' [-Wunused-variable] 295 | int n = e-s; | ^ helpfunctions.c: In function 'rescale_variance_R': helpfunctions.c:492:9: warning: variable 'minlen' set but not used [-Wunused-but-set-variable] 492 | int minlen = n; | ^~~~~~ helpfunctions.c:487:9: warning: unused variable 'debug' [-Wunused-variable] 487 | int debug = *INTEGER(debugI); | ^~~~~ gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c inspect_code.c -o inspect_code.o inspect_code.c: In function 'cInspect_single': inspect_code.c:530:12: warning: unused variable 'xi' [-Wunused-variable] 530 | double xi = *(REAL(xiI)); | ^~ inspect_code.c: In function 'cInspect_test_calibrate': inspect_code.c:1149:9: warning: unused variable 'hh' [-Wunused-variable] 1149 | int hh; | ^~ inspect_code.c:1148:9: warning: unused variable 'll' [-Wunused-variable] 1148 | int ll; | ^~ inspect_code.c:1145:9: warning: unused variable 'e' [-Wunused-variable] 1145 | int e = n-1; | ^ inspect_code.c:1144:9: warning: unused variable 's' [-Wunused-variable] 1144 | int s = -1; | ^ gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pilliat_method.c -o pilliat_method.o pilliat_method.c: In function 'cPilliat_call': pilliat_method.c:271:9: warning: unused variable 't2' [-Wunused-variable] 271 | int t2 = 0; | ^~ pilliat_method.c:270:9: warning: unused variable 't1' [-Wunused-variable] 270 | int t1 = 0; | ^~ pilliat_method.c:266:9: warning: unused variable 'stop' [-Wunused-variable] 266 | int stop = 0; | ^~~~ pilliat_method.c:263:9: warning: variable 'jump' set but not used [-Wunused-but-set-variable] 263 | int jump = 0; | ^~~~ pilliat_method.c:262:9: warning: unused variable 'jj' [-Wunused-variable] 262 | int jj=0; | ^~ pilliat_method.c: In function 'cPilliat_calibrate': pilliat_method.c:908:9: warning: unused variable 'stop' [-Wunused-variable] 908 | int stop; | ^~~~ pilliat_method.c:896:9: warning: unused variable 'jj' [-Wunused-variable] 896 | int jj; | ^~ pilliat_method.c: In function 'cPilliat_test': pilliat_method.c:1378:9: warning: variable 'minlen' set but not used [-Wunused-but-set-variable] 1378 | int minlen = n; | ^~~~~~ pilliat_method.c: In function 'cPilliat_test_calibrate': pilliat_method.c:1628:9: warning: variable 'minlen' set but not used [-Wunused-but-set-variable] 1628 | int minlen = n; | ^~~~~~ gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sbs_single.c -o sbs_single.o sbs_single.c: In function 'cSBS_single': sbs_single.c:32:9: warning: variable 'minlen' set but not used [-Wunused-but-set-variable] 32 | int minlen = n; | ^~~~~~ sbs_single.c: In function 'cSBS_single_calibrate': sbs_single.c:197:12: warning: unused variable 'tmp' [-Wunused-variable] 197 | double tmp = 0; | ^~~ sbs_single.c:172:9: warning: variable 'minlen' set but not used [-Wunused-but-set-variable] 172 | int minlen = n; | ^~~~~~ sbs_single.c:151:9: warning: unused variable 'debug' [-Wunused-variable] 151 | int debug = *INTEGER(debugI); | ^~~~~ gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sorting.c -o sorting.o gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o HDCD.so esac_code.o helpfunctions.o inspect_code.o pilliat_method.o registerDynamicSymbol.o sbs_single.o sorting.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/HDCD/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/HDCD/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/HDCD/src' installing to /data/gannet/ripley/R/packages/tests-devel/HDCD.Rcheck/00LOCK-HDCD/00new/HDCD/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HDCD)