* installing *source* package ‘FRESHD’ ... ** package ‘FRESHD’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/FRESHD/src' g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcppfunc.cpp -o rcppfunc.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcppfunc_mag.cpp -o rcppfunc_mag.o In file included from auxfunc.h:20, from rcppfunc.cpp:1: qprog/eiquadprog.h: In instantiation of 'double Eigen::solve_quadprog2(LLT, 1>&, double, MatrixBase&, const MatrixBase&, const MatrixBase&, const MatrixBase&, const MatrixBase&, MatrixBase&) [with tA = Matrix; tB = Matrix; tC = Matrix; tD = Matrix; tE = Matrix; tF = Matrix]': qprog/eiquadprog.h:154:25: required from 'double Eigen::solve_quadprog(MatrixBase&, MatrixBase&, const MatrixBase&, const MatrixBase&, const MatrixBase&, const MatrixBase&, MatrixBase&) [with tA = Matrix; tB = Matrix; tC = Matrix; tD = Matrix; tE = Matrix; tF = Matrix; tG = Matrix]' auxfunc.h:112:15: required from here qprog/eiquadprog.h:181:7: warning: variable 'q' set but not used [-Wunused-but-set-variable] 181 | int q; | ^ auxfunc.h: In function 'arma::vec aradmm_estimate(int, double, double, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, double, double)': auxfunc.h:215:19: warning: 'bb_h' may be used uninitialized [-Wmaybe-uninitialized] 215 | double ss_h = sqrt(bb_h); | ~~~~^~~~~~ auxfunc.h:180:8: note: 'bb_h' was declared here 180 | double bb_h,bb_g; | ^~~~ rcppfunc.cpp: In function 'Rcpp::List solveMMP(arma::mat, arma::mat, arma::mat, arma::mat, Rcpp::NumericVector, std::string, double, arma::vec, int, int, double, arma::mat, double, int, std::string, std::string, double, double, double, double, double, double, int, std::string, int, int, double, double, double)': rcppfunc.cpp:91:10: warning: 'Lwave' may be used uninitialized [-Wmaybe-uninitialized] 91 | tmp = wt(Y.slice(j), dim, Lwave, h, g, J, p1, p2, p3, tmp); | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rcppfunc.cpp:40:5: note: 'Lwave' was declared here 40 | int Lwave; | ^~~~~ rcppfunc.cpp:271:29: warning: 'min_eig' may be used uninitialized [-Wmaybe-uninitialized] 271 | delta = (-2 * pow(delta, 2) * min_eig * eta | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ rcppfunc.cpp:55:12: note: 'min_eig' was declared here 55 | dres_norm, min_eig,//eta, //gamk, | ^~~~~~~ rcppfunc.cpp:261:15: warning: 'delta' may be used uninitialized [-Wmaybe-uninitialized] 261 | Xg = proxg_tos(Z, delta, -PhitY, eigen_Q, eigen_AE, eigen_ce, eigen_AI, eigen_ci, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 | p1, p2, p3); | ~~~~~~~~~~~ rcppfunc.cpp:54:8: note: 'delta' was declared here 54 | double delta, | ^~~~~ g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o FRESHD.so RcppExports.o rcppfunc.o rcppfunc_mag.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/FRESHD/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/FRESHD/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/FRESHD/src' installing to /data/gannet/ripley/R/packages/tests-devel/FRESHD.Rcheck/00LOCK-FRESHD/00new/FRESHD/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FRESHD)