* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/EpiInvert.Rcheck’
* using R Under development (unstable) (2024-04-05 r86344)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘EpiInvert/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EpiInvert’ version ‘0.3.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EpiInvert’ can be installed ... [82s/52s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/EpiInvert-00install.html' for details.
* used C++ compiler: ‘g++-13 (GCC) 13.2.0’
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) EpiIndicators.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiIndicators.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiIndicators.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiIndicators.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiIndicators.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiIndicators.Rd:29-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiIndicators.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiIndicators.Rd:34-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiIndicators.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiIndicators.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiIndicators.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiIndicators.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiIndicators.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiIndicators.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiIndicators.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:33-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert.Rd:36-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert.Rd:42-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert.Rd:45-47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert.Rd:48-50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert.Rd:51-52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert.Rd:58-59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert.Rd:68-69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:73-74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:76-77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:79-80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:82-84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:88: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:90-91: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:93-94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:96-97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:99-100: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert.Rd:102-103: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvertForecast.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvertForecast.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvertForecast.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvertForecast.Rd:55-58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvertForecast.Rd:60-63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvertForecast.Rd:65-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvertForecast.Rd:70-73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EpiInvert_plot.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert_plot.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert_plot.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) EpiInvert_plot.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) joint_indicators_by_date.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) joint_indicators_by_date.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) joint_indicators_by_date.Rd:28-29: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [10s/13s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
  Running ‘testthat.R’
* checking PDF version of manual ... [8s/12s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE