* installing *source* package ‘DetR’ ... ** package ‘DetR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ using C++ compiler: ‘g++-13 (GCC) 13.2.0’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/DetR/src' g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -DEIGEN_DONT_PARALLELIZE -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DetR.cpp -o DetR.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -DEIGEN_DONT_PARALLELIZE -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DetR_2.cpp -o DetR_2.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -DEIGEN_DONT_PARALLELIZE -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DetR_3.cpp -o DetR_3.o DetR.cpp: In function 'void FFOgkBasis(const Eigen::MatrixXd&, const int&, const int&, Eigen::VectorXi&, const int&, Eigen::VectorXi&, int)': DetR.cpp:335:43: warning: unused variable 'h0' [-Wunused-variable] 335 | const int p=xi.cols(),n=xi.rows(),h0=(n+1)/2; | ^~ DetR.cpp: In function 'double unimcd_in(const Eigen::VectorXd&, const int&)': DetR.cpp:388:41: warning: unused variable 'sumw' [-Wunused-variable] 388 | double initmean=0.0,initcov=0.0,sumw=0.0; | ^~~~ DetR.cpp: In function 'void CstepPrep(const Eigen::MatrixXd&, const Eigen::VectorXd&, const Eigen::VectorXi&, Eigen::VectorXd&, const int&)': DetR.cpp:420:19: warning: unused variable 'n' [-Wunused-variable] 420 | const int n=x.rows(),p=x.cols(); | ^ DetR.cpp:421:16: warning: unused variable 'w1' [-Wunused-variable] 421 | double w1,w0; | ^~ DetR.cpp:421:19: warning: unused variable 'w0' [-Wunused-variable] 421 | double w1,w0; | ^~ DetR.cpp:422:13: warning: unused variable 'w2' [-Wunused-variable] 422 | int w2=1,i,j=0; | ^~ DetR.cpp:422:20: warning: unused variable 'j' [-Wunused-variable] 422 | int w2=1,i,j=0; | ^ g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -DEIGEN_DONT_PARALLELIZE -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ext_cstep.cpp -o ext_cstep.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -DEIGEN_DONT_PARALLELIZE -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c unimcd.cpp -o unimcd.o In file included from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Core:341, from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1, from DetR.cpp:16: /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o DetR.so DetR.o DetR_2.o DetR_3.o ext_cstep.o init.o unimcd.o -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/DetR/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/DetR/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/DetR/src' installing to /data/gannet/ripley/R/packages/tests-devel/DetR.Rcheck/00LOCK-DetR/00new/DetR/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DetR)