* installing *source* package ‘DataGraph’ ... ** package ‘DataGraph’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/DataGraph/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTArrayConversion.cpp -o DTArrayConversion.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTCharArray.cpp -o DTCharArray.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTDataFile.cpp -o DTDataFile.o DTDataFile.cpp:532: warning: ignoring '#pragma mark DTDataFile' [-Wunknown-pragmas] 532 | #pragma mark DTDataFile | g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTDataStorage.cpp -o DTDataStorage.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTDictionary.cpp -o DTDictionary.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTDoubleArray.cpp -o DTDoubleArray.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTDoubleArrayOperators.cpp -o DTDoubleArrayOperators.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTEndianSwap.cpp -o DTEndianSwap.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTError.cpp -o DTError.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTFile.cpp -o DTFile.o DTFile.cpp:644: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 644 | #pragma mark ---------- Read in a single number | DTFile.cpp:735: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 735 | #pragma mark ---------- Read in an array | DTFile.cpp:1230: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 1230 | #pragma mark ---------- Write an array | g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTFloatArray.cpp -o DTFloatArray.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTFloatArrayOperators.cpp -o DTFloatArrayOperators.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTIntArray.cpp -o DTIntArray.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTPoint3D.cpp -o DTPoint3D.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTPointCollection3D.cpp -o DTPointCollection3D.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTRegion1D.cpp -o DTRegion1D.o DTPointCollection3D.cpp:186: warning: ignoring '#pragma mark Mutable' [-Wunknown-pragmas] 186 | #pragma mark Mutable version | DTPointCollection3D.cpp:346: warning: ignoring '#pragma mark Functions' [-Wunknown-pragmas] 346 | #pragma mark Functions | DTPointCollection3D.cpp:495: warning: ignoring '#pragma mark I' [-Wunknown-pragmas] 495 | #pragma mark I/O Routines | g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTRegion3D.cpp -o DTRegion3D.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTShortIntArray.cpp -o DTShortIntArray.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTStringList.cpp -o DTStringList.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTSurface3D.cpp -o DTSurface3D.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTTable.cpp -o DTTable.o DTTable.cpp:32: warning: ignoring '#pragma mark Table' [-Wunknown-pragmas] 32 | #pragma mark Table Column | DTTable.cpp:780: warning: ignoring '#pragma mark DTTableStructure' [-Wunknown-pragmas] 780 | #pragma mark DTTableStructure | DTTable.cpp:798: warning: ignoring '#pragma mark Table' [-Wunknown-pragmas] 798 | #pragma mark Table | DTTable.cpp:1082: warning: ignoring '#pragma mark Columns' [-Wunknown-pragmas] 1082 | #pragma mark Columns | DTTable.cpp:1089: warning: ignoring '#pragma mark Numbers' [-Wunknown-pragmas] 1089 | #pragma mark Numbers | DTTable.cpp:1267: warning: ignoring '#pragma mark Date' [-Wunknown-pragmas] 1267 | #pragma mark Date | DTTable.cpp:1313: warning: ignoring '#pragma mark Text' [-Wunknown-pragmas] 1313 | #pragma mark Text | DTTable.cpp:1459: warning: ignoring '#pragma mark Points' [-Wunknown-pragmas] 1459 | #pragma mark Points in 3D | DTTable.cpp:1506: warning: ignoring '#pragma mark Surfaces' [-Wunknown-pragmas] 1506 | #pragma mark Surfaces | DTTable.cpp:1552: warning: ignoring '#pragma mark Table' [-Wunknown-pragmas] 1552 | #pragma mark Table | DTStringList.cpp: In function 'DTStringList ExtractIndices(const DTStringList&, const DTRange&)': DTStringList.cpp:173:16: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 173 | if (r.end()>A.NumberOfStrings()) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTTransform3D.cpp -o DTTransform3D.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTUCharArray.cpp -o DTUCharArray.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTUShortIntArray.cpp -o DTUShortIntArray.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DTUtilities.cpp -o DTUtilities.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Driver.cpp -o Driver.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DDG_NOSTDErrOut -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o Driver.cpp:722: warning: ignoring '#pragma mark Drivering' [-Wunknown-pragmas] 722 | #pragma mark Drivering routines | Driver.cpp:750: warning: ignoring '#pragma mark DataTable' [-Wunknown-pragmas] 750 | #pragma mark DataTable | Driver.cpp:888: warning: ignoring '#pragma mark DTBin' [-Wunknown-pragmas] 888 | #pragma mark DTBin support | gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c register.c -o register.o g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o DataGraph.so DTArrayConversion.o DTCharArray.o DTDataFile.o DTDataStorage.o DTDictionary.o DTDoubleArray.o DTDoubleArrayOperators.o DTEndianSwap.o DTError.o DTFile.o DTFloatArray.o DTFloatArrayOperators.o DTIntArray.o DTPoint3D.o DTPointCollection3D.o DTRegion1D.o DTRegion3D.o DTShortIntArray.o DTStringList.o DTSurface3D.o DTTable.o DTTransform3D.o DTUCharArray.o DTUShortIntArray.o DTUtilities.o Driver.o RcppExports.o register.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/DataGraph/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/DataGraph/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/DataGraph/src' installing to /data/gannet/ripley/R/packages/tests-devel/DataGraph.Rcheck/00LOCK-DataGraph/00new/DataGraph/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DataGraph)