* installing *source* package ‘DPP’ ...
** package ‘DPP’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/DPP/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DPPmcmc.cpp -o DPPmcmc.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Distribution.cpp -o Distribution.o
DPPmcmc.cpp: In member function 'void DPPmcmc::allocationProposal(int)':
DPPmcmc.cpp:824:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
824 | for(int i=0;i<these_categories_are_empty.size();i++) {
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DPPmcmc.cpp: In member function 'std::vector<int> DPPmcmc::evaluateVectorGreaterThanInt(std::vector<int>, int)':
DPPmcmc.cpp:973:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
973 | for(int i=0;i<vector1.size();i++){
| ~^~~~~~~~~~~~~~~
In file included from DPPmcmc.cpp:4:
helper.h: In instantiation of 'T sumVector(std::vector<T>) [with T = double]':
DPPmcmc.cpp:118:23: required from here
helper.h:68:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
68 | for(int i=0;i<vector1.size();i++)
| ~^~~~~~~~~~~~~~~
helper.h: In instantiation of 'std::vector<T> concatenateVectors(std::vector<T>, std::vector<T>) [with T = double]':
DPPmcmc.cpp:414:44: required from here
helper.h:83:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
83 | for (int i=0;i<vector2.size();i++){
| ~^~~~~~~~~~~~~~~
helper.h: In instantiation of 'std::vector<T> concatenateVectors(std::vector<T>, std::vector<T>) [with T = int]':
DPPmcmc.cpp:415:42: required from here
helper.h:83:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
helper.h: In instantiation of 'std::vector<double> divideVectorByDouble(std::vector<T>, double) [with T = double]':
DPPmcmc.cpp:713:24: required from here
helper.h:21:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
21 | for(int i=0;i<vector1.size();i++){
| ~^~~~~~~~~~~~~~~
helper.h: In instantiation of 'std::vector<T> logVector(std::vector<T>) [with T = double]':
DPPmcmc.cpp:714:40: required from here
helper.h:47:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
47 | for(int i=0;i<vector1.size();i++)
| ~^~~~~~~~~~~~~~~
helper.h: In instantiation of 'std::vector<T> expVector(std::vector<T>) [with T = double]':
DPPmcmc.cpp:717:47: required from here
helper.h:58:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
58 | for(int i=0;i<vector1.size();i++)
| ~^~~~~~~~~~~~~~~
helper.h: In instantiation of 'bool anyEqual(std::vector<T>, double) [with T = double]':
DPPmcmc.cpp:814:15: required from here
helper.h:116:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
116 | for(int i=0;i<vector1.size();i++){
| ~^~~~~~~~~~~~~~~
helper.h: In instantiation of 'std::vector<T> whichAreEqual(std::vector<T>, T) [with T = double]':
DPPmcmc.cpp:820:66: required from here
helper.h:35:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
35 | for(int i=0;i<vector1.size();i++){
| ~^~~~~~~~~~~~~~~
helper.h: In instantiation of 'std::vector<T> removeElementAtPosition(std::vector<T>, int) [with T = double]':
DPPmcmc.cpp:844:43: required from here
helper.h:128:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
128 | for(int i=0;i<vector1.size();i++){
| ~^~~~~~~~~~~~~~~
helper.h: In instantiation of 'std::vector<T> removeElementAtPosition(std::vector<T>, int) [with T = int]':
DPPmcmc.cpp:856:62: required from here
helper.h:128:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
Distribution.cpp: In member function 'int Normal::sample_int_prob(std::vector<double>)':
Distribution.cpp:133:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
133 | for(int i=1;i<probs.size();i++){
| ~^~~~~~~~~~~~~
Distribution.cpp:141:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
141 | for(int i=0;i<limits.size();i++){
| ~^~~~~~~~~~~~~~
Distribution.cpp: In member function 'virtual double Degenerate::lnProb(std::vector<double>)':
Distribution.cpp:493:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
493 | for(int i = 0; i < val.size(); ++i) {
| ~~^~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c model.cpp -o model.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c registerDynamicSymbols.c -o registerDynamicSymbols.o
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o DPP.so DPPmcmc.o Distribution.o RcppExports.o model.o registerDynamicSymbols.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/DPP/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/DPP/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/DPP/src'
installing to /data/gannet/ripley/R/packages/tests-devel/DPP.Rcheck/00LOCK-DPP/00new/DPP/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DPP)