* installing *source* package ‘Cubist’ ...
** package ‘Cubist’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Cubist/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c construct.c -o construct.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c contin.c -o contin.o
contin.c: In function 'EvalContinuousAtt':
contin.c:180:18: warning: 'BestI' may be used uninitialized [-Wmaybe-uninitialized]
  180 |     LowVal = SRec[BestI].V;
      |                  ^
contin.c:54:17: note: 'BestI' was declared here
   54 |   CaseNo i, Xp, BestI, Cases, Edge, LoK, HiK;
      |                 ^~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c discr.c -o discr.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c formrules.c -o formrules.o
formrules.c: In function 'PruneRule':
formrules.c:245:14: warning: variable 'Bestid' set but not used [-Wunused-but-set-variable]
  245 |   int d, id, Bestid, Remaining = NCond;
      |              ^~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c formtree.c -o formtree.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c getdata.c -o getdata.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c getnames.c -o getnames.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c global.c -o global.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c hash.c -o hash.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c implicitatt.c -o implicitatt.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c instance.c -o instance.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c modelfiles.c -o modelfiles.o
modelfiles.c: In function 'ReadHeader':
modelfiles.c:436:16: warning: 'Att' may be used uninitialized [-Wmaybe-uninitialized]
  436 |       AttMinVal[Att] = Xd;
      |                ^
modelfiles.c:325:13: note: 'Att' was declared here
  325 |   Attribute Att;
      |             ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c predict.c -o predict.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c prunetree.c -o prunetree.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c rcubist.c -o rcubist.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c redefine.c -o redefine.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c regress.c -o regress.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c rsample.c -o rsample.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c rulebasedmodels.c -o rulebasedmodels.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c rules.c -o rules.o
In file included from rules.c:32:
rules.c: In function 'PrintRule':
defns.h:165:56: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  165 |   (n1->Tested < n2->Tested || n1->Tested == n2->Tested && n1->Cut < n2->Cut)
rules.c:293:21: note: in expansion of macro 'Before'
  293 |             (!dd || Before(R->Lhs[id], R->Lhs[dd]))) {
      |                     ^~~~~~
rules.c: In function 'PrintCondition':
rules.c:413:30: warning: 'Last' may be used uninitialized [-Wmaybe-uninitialized]
  413 |               AttValName[Att][Last]);
      |                              ^
rules.c:360:21: note: 'Last' was declared here
  360 |   DiscrValue v, pv, Last, Values = 0;
      |                     ^~~~
rules.c: In function 'Satisfies':
rules.c:483:19: warning: 'Outcome' may be used uninitialized [-Wmaybe-uninitialized]
  483 |   return (Outcome == OneCond->TestValue);
      |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
rules.c:455:14: note: 'Outcome' was declared here
  455 |   DiscrValue Outcome;
      |              ^~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c sample.c -o sample.o
sample.c: In function 'Ymain':
sample.c:23:25: warning: unused variable 'Option' [-Wunused-variable]
   23 |   extern String OptArg, Option;
      |                         ^~~~~~
sample.c:20:10: warning: variable 'pval' set but not used [-Wunused-but-set-variable]
   20 |   double pval;
      |          ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c sort.c -o sort.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c stats.c -o stats.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c strbuf.c -o strbuf.o
strbuf.c: In function 'strbuf_vprintf':
strbuf.c:193:11: warning: unused variable 'ap3' [-Wunused-variable]
  193 |   va_list ap3;
      |           ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c top.c -o top.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c trees.c -o trees.o
trees.c: In function 'MaxLine':
trees.c:279:10: warning: 'Ll' may be used uninitialized [-Wmaybe-uninitialized]
  279 |       Ll += 6;
      |       ~~~^~~~
trees.c:249:7: note: 'Ll' was declared here
  249 |   int Ll, One, MaxLl = 0;
      |       ^~
In file included from trees.c:32:
trees.c: In function 'ShowBranch':
defns.h:131:40: warning: 'Last' may be used uninitialized [-Wmaybe-uninitialized]
  131 | #define ForEach(v, f, l) for (v = f; v <= l; ++v)
trees.c:215:5: note: in expansion of macro 'ForEach'
  215 |     ForEach(Pv, 1, Last) {
      |     ^~~~~~~
trees.c:163:18: note: 'Last' was declared here
  163 |   DiscrValue Pv, Last;
      |                  ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c update.c -o update.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c utility.c -o utility.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c xval.c -o xval.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o Cubist.so construct.o contin.o discr.o formrules.o formtree.o getdata.o getnames.o global.o hash.o implicitatt.o instance.o modelfiles.o predict.o prunetree.o rcubist.o redefine.o regress.o rsample.o rulebasedmodels.o rules.o sample.o sort.o stats.o strbuf.o top.o trees.o update.o utility.o xval.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Cubist/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Cubist/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Cubist/src'
installing to /data/gannet/ripley/R/packages/tests-devel/Cubist.Rcheck/00LOCK-Cubist/00new/Cubist/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Cubist)