* installing *source* package ‘Corbi’ ... ** package ‘Corbi’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Corbi/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Corbi.cpp -o Corbi.o In file included from Corbi.h:5, from Corbi.cpp:1: misc.h: In function 'SEXPREC* GetListElement(SEXP, const char*)': misc.h:82:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 82 | for (int i = 0; i < length(list); i++) | ^~~ misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 88 | return value; | ^~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NetDEG.cpp -o NetDEG.o In file included from Corbi.h:5, from NetDEG.cpp:1: misc.h: In function 'SEXPREC* GetListElement(SEXP, const char*)': misc.h:82:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 82 | for (int i = 0; i < length(list); i++) | ^~~ misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 88 | return value; | ^~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NetQuery.cpp -o NetQuery.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ProAlign.cpp -o ProAlign.o In file included from Corbi.h:5, from NetQuery.cpp:1: misc.h: In function 'SEXPREC* GetListElement(SEXP, const char*)': misc.h:82:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 82 | for (int i = 0; i < length(list); i++) | ^~~ misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 88 | return value; | ^~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Subnets.cpp -o Subnets.o In file included from Corbi.h:5, from ProAlign.cpp:1: misc.h: In function 'SEXPREC* GetListElement(SEXP, const char*)': misc.h:82:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 82 | for (int i = 0; i < length(list); i++) | ^~~ misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 88 | return value; | ^~~~~~ In file included from Corbi.h:5, from Subnets.cpp:1: misc.h: In function 'SEXPREC* GetListElement(SEXP, const char*)': misc.h:82:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 82 | for (int i = 0; i < length(list); i++) | ^~~ misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 88 | return value; | ^~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c multihyper.cpp -o multihyper.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c quantile.cpp -o quantile.o In file included from Corbi.h:5, from multihyper.cpp:1: misc.h: In function 'SEXPREC* GetListElement(SEXP, const char*)': misc.h:82:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 82 | for (int i = 0; i < length(list); i++) | ^~~ misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 88 | return value; | ^~~~~~ In file included from Corbi.h:5, from quantile.cpp:1: misc.h: In function 'SEXPREC* GetListElement(SEXP, const char*)': misc.h:82:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 82 | for (int i = 0; i < length(list); i++) | ^~~ misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 88 | return value; | ^~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utils.cpp -o utils.o In file included from Corbi.h:5, from utils.cpp:1: misc.h: In function 'SEXPREC* GetListElement(SEXP, const char*)': misc.h:82:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 82 | for (int i = 0; i < length(list); i++) | ^~~ misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 88 | return value; | ^~~~~~ g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o Corbi.so Corbi.o NetDEG.o NetQuery.o ProAlign.o Subnets.o multihyper.o quantile.o utils.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Corbi/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Corbi/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Corbi/src' installing to /data/gannet/ripley/R/packages/tests-devel/Corbi.Rcheck/00LOCK-Corbi/00new/Corbi/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Corbi)