* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/CompR.Rcheck’
* using R Under development (unstable) (2024-04-05 r86344)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘CompR/DESCRIPTION’ ... OK
* this is package ‘CompR’ version ‘1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CompR’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/CompR-00install.html' for details.
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/11s] OK
* checking Rd files ... NOTE
checkRd: (-1) ClassifPaired.Rd:28: Lost braces; missing escapes or markup?
    28 | \code{hclust}, \code{cutree} of {stats} package}
       |                                 ^
checkRd: (-1) EstimBradley.Rd:52-53: Lost braces
    52 |               \code{lvrH0} { \code{matrix} of size (\code{Tcla} * number of criteria), giving the value of the log likelihood under the hypothesis of equality of Bradley's scores
       |                            ^
checkRd: (-1) EstimBradley.Rd:55-56: Lost braces
    55 |               \code{lvrH1} {\code{matrix} of size (\code{Tcla} * number of criteria), giving the value of the log likelihood under the hypothesis of non equality of Bradley's scores
       |                            ^
checkRd: (-1) EstimBradley.Rd:58-59: Lost braces
    58 |               \code{lRatio} {\code{matrix} of size (\code{Tcla} * number of criteria), giving the value of the log likelihood Ratio statistic
       |                             ^
checkRd: (-1) EstimBradley.Rd:61-62: Lost braces
    61 |               \code{Pvalue} {\code{matrix} of size (\code{Tcla} * number of criteria), giving the P value of the log likelihood Ratio test
       |                             ^
checkRd: (-1) EstimBradley.Rd:64-65: Lost braces
    64 |               \code{H1} {\code{matrix} of size (\code{Tcla} * number of criteria) giving the result of rejection of equality of Bradley's scores
       |                         ^
checkRd: (-1) getRestestglob.Rd:18: Lost braces
    18 | \code{lvrH0} { \code{matrix} of size (\code{Tcla} * number of criteria), giving the value of the log likelihood under the hypothesis of equality of Bradley's scores}
       |              ^
checkRd: (-1) getRestestglob.Rd:20: Lost braces
    20 | \code{lvrH1} {\code{matrix} of size (\code{Tcla} * number of criteria), giving the value of the log likelihood under the hypothesis of non equality of Bradley's scores}
       |              ^
checkRd: (-1) getRestestglob.Rd:22: Lost braces
    22 | \code{lRatio} {\code{matrix} of size (\code{Tcla} * number of criteria), giving the value of the log likelihood Ratio statistic}
       |               ^
checkRd: (-1) getRestestglob.Rd:24: Lost braces
    24 | \code{Pvalue} {\code{matrix} of size (\code{Tcla} * number of criteria), giving the P value of the log likelihood Ratio test}
       |               ^
checkRd: (-1) getRestestglob.Rd:26: Lost braces
    26 | \code{H1} {\code{matrix} of size (\code{Tcla} * number of criteria) giving the result of rejection of equality of Bradley's scores}
       |           ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [13s/16s] OK
* checking PDF version of manual ... [11s/16s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE