* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/CLME.Rcheck’ * using R Under development (unstable) (2024-04-05 r86344) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘CLME/DESCRIPTION’ ... OK * this is package ‘CLME’ version ‘2.0-12’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CLME’ can be installed ... [20s/28s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/CLME-00install.html' for details. * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [30s/38s] OK * checking Rd files ... NOTE checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme.Rd:84: Escaped LaTeX specials: \& checkRd: (-1) clme_em.Rd:107: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme_em.Rd:108: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme_em.Rd:109: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme_em.Rd:110: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme_em.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme_em.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme_em.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) clme_em.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) create.constraints.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) create.constraints.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) create.constraints.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) create.constraints.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [19s/21s] OK * checking PDF version of manual ... [9s/12s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE